Strain Fitness in Pseudomonas putida KT2440 around PP_3992

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,501,492	-				-0.5
4,501,492	-				-1.7
4,501,492	-				-3.6
4,501,520	+				-2.2
4,501,520	+				-1.3
4,501,521	-				-0.8
4,501,552	+				-1.4
4,501,553	-				+1.3
4,501,615	+		PP_3990	0.12	-2.5
4,501,615	+		PP_3990	0.12	+0.9
4,501,616	-		PP_3990	0.12	-1.1
4,501,616	-		PP_3990	0.12	-1.0
4,501,632	+		PP_3990	0.14	+0.5
4,501,710	-		PP_3990	0.26	-1.2
4,501,720	+		PP_3990	0.27	-1.0
4,501,720	+		PP_3990	0.27	+0.2
4,501,721	-		PP_3990	0.27	-2.9
4,501,738	-		PP_3990	0.30	+1.5
4,501,859	+		PP_3990	0.48	+0.1
4,501,860	-		PP_3990	0.48	-1.3
4,501,912	+		PP_3990	0.56	+1.5
4,501,912	+		PP_3990	0.56	+0.6
4,501,912	+		PP_3990	0.56	-2.7
4,501,913	-		PP_3990	0.56	+0.4
4,501,913	-		PP_3990	0.56	-0.6
4,501,913	-		PP_3990	0.56	-0.7
4,502,035	-		PP_3990	0.74	-0.3
4,502,112	+		PP_3990	0.86	+0.4
4,502,112	+		PP_3990	0.86	-0.1
4,502,112	+		PP_3990	0.86	+0.7
4,502,112	+		PP_3990	0.86	-2.8
4,502,113	-		PP_3990	0.86	-0.4
4,502,113	-		PP_3990	0.86	+1.5
4,502,116	+		PP_3990	0.86	-1.3
4,502,116	+		PP_3990	0.86	+0.2
4,502,117	-		PP_3990	0.86	+1.5
4,502,117	-		PP_3990	0.86	-0.1
4,502,117	-		PP_3990	0.86	-1.1
4,502,117	-		PP_3990	0.86	-0.3
4,502,140	+		PP_3990	0.90	+1.4
4,502,140	+		PP_3990	0.90	+0.4
4,502,140	+		PP_3990	0.90	-2.4
4,502,140	+		PP_3990	0.90	-0.4
4,502,140	+		PP_3990	0.90	-2.1
4,502,140	+		PP_3990	0.90	-1.0
4,502,140	+		PP_3990	0.90	-0.1
4,502,140	+		PP_3990	0.90	-0.7
4,502,140	+		PP_3990	0.90	-0.6
4,502,140	+		PP_3990	0.90	-0.2
4,502,141	-				+1.4
4,502,141	-				-1.3
4,502,141	-				-0.0
4,502,141	-				-0.4
4,502,141	-				+1.5
4,502,141	-				-1.7
4,502,141	-				-2.9
4,502,141	-				+0.3
4,502,141	-				-1.5
4,502,152	+				+1.3
4,502,153	-				-3.0
4,502,153	-				-0.5
4,502,332	+				+1.2
4,502,332	+				+0.7
4,502,332	+				+0.6
4,502,544	+		PP_3992	0.12	-0.2
4,502,544	+		PP_3992	0.12	-2.6
4,502,545	-		PP_3992	0.13	-2.6
4,502,545	-				+1.5
4,502,545	-		PP_3992	0.13	-0.6
4,502,545	-				+1.5
4,502,739	+		PP_3992	0.27	+2.2
4,502,740	-		PP_3992	0.27	-1.1
4,502,740	-		PP_3992	0.27	-0.1
4,502,760	+		PP_3992	0.28	-0.5
4,502,764	-		PP_3992	0.28	-0.6
4,502,999	-		PP_3992	0.45	-2.9
4,503,053	+		PP_3992	0.49	-0.3
4,503,185	+		PP_3992	0.59	-0.3
4,503,186	-				+0.5
4,503,343	+		PP_3992	0.70	-0.9
4,503,343	+		PP_3992	0.70	-0.7
4,503,344	-		PP_3992	0.70	-2.7
4,503,344	-		PP_3992	0.70	-1.1
4,503,344	-		PP_3992	0.70	+0.3
4,503,344	-		PP_3992	0.70	-2.4
4,503,344	-		PP_3992	0.70	-0.5
4,503,344	-		PP_3992	0.70	-1.6
4,503,403	+		PP_3992	0.75	-3.0
4,503,403	+		PP_3992	0.75	-0.4
4,503,409	+		PP_3992	0.75	-1.3
4,503,410	-		PP_3992	0.75	-0.3
4,503,410	-		PP_3992	0.75	-3.0
4,503,410	-		PP_3992	0.75	+0.4
4,503,544	+		PP_3992	0.85	+0.2
4,503,544	+		PP_3992	0.85	+0.9
4,503,544	+		PP_3992	0.85	-0.8
4,503,545	-		PP_3992	0.85	+0.2
4,503,545	-		PP_3992	0.85	-3.2
4,503,586	+		PP_3992	0.88	-1.5
4,503,586	+		PP_3992	0.88	+3.3
4,503,587	-		PP_3992	0.88	+1.1
4,503,773	-				-0.8
4,503,816	+				+0.5
4,503,844	+				-1.5
4,503,844	+				+0.8