Strain Fitness in Pseudomonas putida KT2440 around PP_3963

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,472,476	-		PP_3962	0.55	-0.8
4,472,479	+		PP_3962	0.56	+0.7
4,472,479	+		PP_3962	0.56	+3.2
4,472,517	+		PP_3962	0.61	-0.3
4,472,517	+		PP_3962	0.61	-1.6
4,472,518	-		PP_3962	0.61	-1.5
4,472,518	-		PP_3962	0.61	-2.5
4,472,706	+		PP_3962	0.88	+0.8
4,472,706	+		PP_3962	0.88	-1.3
4,472,760	-				+1.3
4,472,791	+				-0.1
4,472,791	+				-1.0
4,472,792	-				-2.4
4,472,813	+				+0.2
4,472,813	+				+0.4
4,472,813	+				-2.3
4,472,813	+				-1.0
4,472,814	-				-0.6
4,472,814	-				-0.5
4,472,814	-				+0.4
4,472,814	-				-2.1
4,472,814	-				+0.5
4,472,814	-				-0.2
4,472,814	-				-3.3
4,472,817	+				+0.1
4,472,817	+				+0.5
4,472,818	-				-3.7
4,472,818	-				-0.1
4,472,818	-				+2.2
4,472,818	-				-0.2
4,472,818	-				+1.0
4,472,854	-				+0.5
4,472,879	+				-1.8
4,472,880	-				+1.0
4,472,880	-				+0.7
4,472,889	+				+1.0
4,472,971	+				+0.6
4,472,971	+				-0.1
4,472,972	-				-1.6
4,473,017	+				-0.2
4,473,017	+				+0.8
4,473,057	+				-0.2
4,473,058	-				-1.7
4,473,198	+				+0.8
4,473,199	-				+0.2
4,473,271	+				-1.8
4,473,271	+				+1.3
4,473,271	+				+0.4
4,473,272	-				-2.2
4,473,272	-				-3.2
4,473,272	-				-0.3
4,473,276	+				-0.6
4,473,277	-				+0.2
4,473,300	+				-1.3
4,473,300	+				-2.8
4,473,300	+				-1.3
4,473,300	+				-3.3
4,473,300	+				-1.5
4,473,300	+				+1.4
4,473,300	+				+0.7
4,473,301	-				+0.0
4,473,301	-				+0.2
4,473,301	-				-2.9
4,473,301	-				-0.8
4,473,301	-				-0.0
4,473,301	-				+0.5
4,473,304	+				-2.2
4,473,304	+				+0.6
4,473,304	+				+0.4
4,473,304	+				+0.0
4,473,304	+				-0.7
4,473,304	+				+0.3
4,473,304	+				-2.0
4,473,305	-				+1.0
4,473,305	-				-0.4
4,473,305	-				+0.5
4,473,305	-				+0.6
4,473,305	-				-2.2
4,473,324	+				+0.1
4,473,325	-				+1.3
4,473,334	+				+1.2
4,473,334	+				-2.7
4,473,335	-				-2.0
4,473,343	+				-0.5
4,473,344	-				-0.2
4,473,344	-				-3.0
4,473,344	-				-0.5
4,473,346	+				-0.7
4,473,346	+				-0.2
4,473,347	-				-0.2
4,473,347	-				-0.0
4,473,347	-				+0.2
4,473,347	-				-0.1
4,473,372	+				+1.4
4,473,372	+				-3.0
4,473,372	+				-0.5
4,473,723	+		PP_3963	0.80	-1.2
4,473,724	-		PP_3963	0.81	-0.0
4,473,724	-		PP_3963	0.81	+0.0
4,473,744	+		PP_3963	0.87	-0.8
4,473,744	+		PP_3963	0.87	-0.9
4,473,745	-		PP_3963	0.87	-2.3
4,473,745	-		PP_3963	0.87	-2.0
4,473,792	+				+0.1
4,473,793	-				-0.2
4,473,880	-				-0.3
4,473,897	-				-0.8
4,473,956	+				-0.3
4,473,970	+				+1.5
4,473,996	+				+0.1
4,473,996	+				-1.3
4,473,996	+				-3.8
4,473,997	-				-0.6
4,473,997	-				-0.4
4,474,092	-				+0.8
4,474,152	+				-2.0
4,474,295	+		PP_3964	0.19	-2.7
4,474,399	+		PP_3964	0.26	-1.5
4,474,451	+		PP_3964	0.29	-0.2
4,474,452	-		PP_3964	0.29	-0.2
4,474,452	-		PP_3964	0.29	-0.7
4,474,673	+		PP_3964	0.44	+1.5
4,474,725	-		PP_3964	0.47	+0.3
4,474,725	-		PP_3964	0.47	+0.7