Strain Fitness in Pseudomonas putida KT2440 around PP_3949

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,453,009	+		PP_3948	0.73	-0.8
4,453,010	-		PP_3948	0.73	+0.9
4,453,010	-		PP_3948	0.73	+0.1
4,453,010	-		PP_3948	0.73	-3.4
4,453,049	+		PP_3948	0.74	-2.0
4,453,049	+		PP_3948	0.74	+1.6
4,453,094	+		PP_3948	0.76	-2.5
4,453,094	+		PP_3948	0.76	+0.2
4,453,094	+		PP_3948	0.76	+0.7
4,453,094	+		PP_3948	0.76	+2.0
4,453,095	-		PP_3948	0.76	+1.5
4,453,095	-		PP_3948	0.76	+0.1
4,453,100	+		PP_3948	0.76	-2.2
4,453,262	+		PP_3948	0.80	-0.4
4,453,263	-		PP_3948	0.80	-1.1
4,453,343	+		PP_3948	0.83	-2.4
4,453,343	+		PP_3948	0.83	+0.8
4,453,343	+		PP_3948	0.83	-2.4
4,453,344	-		PP_3948	0.83	-1.1
4,453,439	+		PP_3948	0.85	-3.4
4,453,439	+		PP_3948	0.85	-1.4
4,453,440	-		PP_3948	0.85	+0.1
4,453,811	+				+2.8
4,453,811	+				-1.7
4,453,868	+				+2.1
4,454,081	-		PP_3949	0.18	-0.1
4,454,082	+		PP_3949	0.18	-3.5
4,454,082	+		PP_3949	0.18	+0.5
4,454,082	+		PP_3949	0.18	-0.1
4,454,083	-		PP_3949	0.19	+0.2
4,454,083	-		PP_3949	0.19	-2.6
4,454,083	-		PP_3949	0.19	+1.0
4,454,083	-		PP_3949	0.19	-2.0
4,454,088	+		PP_3949	0.19	-0.5
4,454,112	+		PP_3949	0.23	-1.5
4,454,131	+		PP_3949	0.26	-0.6
4,454,131	+				+0.5
4,454,132	-		PP_3949	0.26	-3.2
4,454,132	-		PP_3949	0.26	-0.3
4,454,295	+		PP_3949	0.52	-2.5
4,454,295	+		PP_3949	0.52	-0.2
4,454,295	+		PP_3949	0.52	-3.2
4,454,295	+		PP_3949	0.52	-3.2
4,454,295	+		PP_3949	0.52	+1.1
4,454,295	+		PP_3949	0.52	-1.8
4,454,298	+		PP_3949	0.52	+1.3
4,454,298	+		PP_3949	0.52	-3.0
4,454,298	+		PP_3949	0.52	+0.2
4,454,298	+		PP_3949	0.52	+0.3
4,454,299	-		PP_3949	0.52	+1.9
4,454,299	-		PP_3949	0.52	+0.5
4,454,299	-		PP_3949	0.52	+1.5
4,454,391	+		PP_3949	0.67	-1.7
4,454,391	+		PP_3949	0.67	-2.8
4,454,391	+		PP_3949	0.67	-0.0
4,454,392	-		PP_3949	0.67	-1.6
4,454,392	-		PP_3949	0.67	-2.6
4,454,392	-		PP_3949	0.67	-0.8
4,454,392	-		PP_3949	0.67	-0.3
4,454,392	-		PP_3949	0.67	-1.4
4,454,392	-		PP_3949	0.67	+1.1
4,454,392	-		PP_3949	0.67	+0.2
4,454,392	-		PP_3949	0.67	-3.3
4,454,392	-		PP_3949	0.67	-2.1
4,454,392	-		PP_3949	0.67	-1.4
4,454,392	-		PP_3949	0.67	+0.2
4,454,442	+		PP_3949	0.75	-0.1
4,454,443	-		PP_3949	0.75	-1.3
4,454,443	-		PP_3949	0.75	-0.3
4,454,445	+		PP_3949	0.75	-0.4
4,454,445	+		PP_3949	0.75	+0.4
4,454,445	+		PP_3949	0.75	-1.8
4,454,445	+		PP_3949	0.75	-0.1
4,454,445	+		PP_3949	0.75	+0.5
4,454,445	+		PP_3949	0.75	+0.2
4,454,445	+		PP_3949	0.75	-0.2
4,454,445	+		PP_3949	0.75	+0.4
4,454,446	-		PP_3949	0.75	+0.9
4,454,446	-		PP_3949	0.75	+0.0
4,454,446	-		PP_3949	0.75	-2.2
4,454,446	-		PP_3949	0.75	-0.7
4,454,446	-		PP_3949	0.75	-2.9
4,454,446	-		PP_3949	0.75	+0.3
4,454,446	-		PP_3949	0.75	-2.4
4,454,446	-		PP_3949	0.75	+0.2
4,454,545	+				-2.7
4,454,545	+				+0.3
4,454,546	-				-2.9
4,454,546	-				+0.8
4,454,546	-				-0.2
4,454,755	+				+0.9
4,454,756	-				-2.8
4,454,973	+				+0.2
4,454,973	+				+1.1
4,455,041	+		PP_3950	0.11	-2.5
4,455,041	+		PP_3950	0.11	+0.2
4,455,041	+		PP_3950	0.11	+3.4
4,455,116	+		PP_3950	0.14	+0.0
4,455,116	+		PP_3950	0.14	+0.2
4,455,566	+		PP_3950	0.35	+0.4
4,455,566	+		PP_3950	0.35	-2.1
4,455,566	+		PP_3950	0.35	+0.1
4,455,567	-		PP_3950	0.35	-3.3