Strain Fitness in Pseudomonas putida KT2440 around PP_3940

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,441,723	-		PP_3939	0.38	-1.2
4,441,777	+		PP_3939	0.42	+0.0
4,441,777	+		PP_3939	0.42	+1.0
4,441,779	+		PP_3939	0.42	-0.1
4,441,779	+		PP_3939	0.42	-0.2
4,441,780	-		PP_3939	0.42	+1.1
4,441,780	-		PP_3939	0.42	-2.4
4,441,794	+		PP_3939	0.43	-4.3
4,441,794	+		PP_3939	0.43	-1.0
4,441,795	-		PP_3939	0.43	-0.5
4,441,798	+		PP_3939	0.43	-2.1
4,441,798	+		PP_3939	0.43	-1.1
4,441,798	+		PP_3939	0.43	-0.6
4,441,799	-		PP_3939	0.43	-1.8
4,441,835	-		PP_3939	0.46	-1.5
4,441,854	+		PP_3939	0.48	-0.4
4,441,855	-		PP_3939	0.48	+1.0
4,441,855	-		PP_3939	0.48	-1.0
4,441,869	+		PP_3939	0.49	-2.1
4,441,869	+		PP_3939	0.49	-0.3
4,441,870	-		PP_3939	0.49	-2.4
4,441,870	-		PP_3939	0.49	+0.2
4,441,870	-		PP_3939	0.49	+0.2
4,441,888	+		PP_3939	0.50	-0.5
4,441,935	+		PP_3939	0.54	-0.3
4,441,935	+		PP_3939	0.54	-1.7
4,441,936	-		PP_3939	0.54	-0.9
4,441,936	-		PP_3939	0.54	-2.4
4,442,040	+		PP_3939	0.62	-1.2
4,442,040	+		PP_3939	0.62	-0.8
4,442,040	+		PP_3939	0.62	-1.9
4,442,287	+		PP_3939	0.81	+1.9
4,442,288	-		PP_3939	0.81	+2.5
4,442,311	+		PP_3939	0.83	-0.8
4,442,389	-		PP_3939	0.89	+1.5
4,442,389	-		PP_3939	0.89	-1.4
4,442,473	+				-1.5
4,442,474	-				+0.1
4,442,474	-				-0.8
4,442,530	+				+1.2
4,442,530	+				-3.2
4,442,536	+				-2.9
4,442,536	+				+3.1
4,443,176	+		PP_3940	0.39	-2.0
4,443,225	+		PP_3940	0.42	-1.1
4,443,226	-		PP_3940	0.42	-0.3
4,443,351	+		PP_3940	0.52	-1.3
4,443,352	-		PP_3940	0.52	-1.3
4,443,543	-		PP_3940	0.67	-2.0
4,443,543	-		PP_3940	0.67	-2.5
4,443,566	+		PP_3940	0.68	+0.7
4,443,566	+		PP_3940	0.68	-1.0
4,443,567	-		PP_3940	0.68	+0.6
4,443,569	+		PP_3940	0.69	-0.8
4,443,569	+		PP_3940	0.69	-1.3
4,443,570	-		PP_3940	0.69	+0.7
4,443,626	+		PP_3940	0.73	-1.3
4,443,626	+		PP_3940	0.73	+0.7
4,443,627	-		PP_3940	0.73	-0.1
4,443,627	-		PP_3940	0.73	-0.4
4,443,627	-		PP_3940	0.73	-0.6
4,443,627	-		PP_3940	0.73	+3.3
4,443,627	-		PP_3940	0.73	-1.8
4,443,920	+				-2.7
4,443,920	+				+1.5
4,444,059	+				-1.1
4,444,059	+				+0.4
4,444,059	+				-2.4
4,444,167	-				-2.7
4,444,248	+				+0.2
4,444,248	+				-2.1
4,444,248	+				+0.6
4,444,249	-				-0.2
4,444,249	-				+0.1
4,444,249	-				-1.2
4,444,406	-		PP_3941	0.34	-1.0
4,444,464	+		PP_3941	0.43	-2.1
4,444,618	+		PP_3941	0.67	-2.6
4,444,618	+		PP_3941	0.67	-0.7
4,444,618	+		PP_3941	0.67	-3.3
4,444,618	+		PP_3941	0.67	-0.1
4,444,633	+		PP_3941	0.69	-0.4
4,444,633	+		PP_3941	0.69	-0.1
4,444,634	-		PP_3941	0.69	+1.0
4,444,634	-		PP_3941	0.69	-3.2
4,444,702	-		PP_3941	0.80	+0.8
4,444,725	+		PP_3941	0.83	+0.7
4,444,801	-				-1.1
4,444,801	-				+1.4
4,444,920	+				-2.4
4,444,920	+				-0.4
4,444,920	+				+0.2
4,444,928	-		PP_3942	0.11	-3.3