Strain Fitness in Pseudomonas putida KT2440 around PP_3933

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,437,363	-		PP_3932	0.37	+1.6
4,437,363	-		PP_3932	0.37	-0.2
4,437,430	+		PP_3932	0.41	+1.7
4,437,430	+		PP_3932	0.41	-3.3
4,437,522	+		PP_3932	0.48	-2.6
4,437,522	+		PP_3932	0.48	-2.9
4,437,522	+		PP_3932	0.48	-0.3
4,437,522	+		PP_3932	0.48	-0.7
4,437,523	-		PP_3932	0.48	+1.6
4,437,566	+		PP_3932	0.51	-3.0
4,437,566	+		PP_3932	0.51	+0.5
4,437,566	+		PP_3932	0.51	+2.8
4,437,567	-		PP_3932	0.51	-3.0
4,437,633	-		PP_3932	0.56	-0.3
4,437,717	-		PP_3932	0.61	+1.2
4,438,122	-		PP_3932	0.90	-0.2
4,438,200	+				-2.9
4,438,201	-				-0.1
4,438,417	+		PP_3933	0.20	-0.7
4,438,418	-		PP_3933	0.20	-2.8
4,438,425	-		PP_3933	0.21	-0.1
4,438,558	-		PP_3933	0.38	+0.8
4,438,586	+		PP_3933	0.42	-1.2
4,438,586	+		PP_3933	0.42	-1.0
4,438,586	+		PP_3933	0.42	-2.0
4,438,587	-		PP_3933	0.42	-0.4
4,438,587	-		PP_3933	0.42	-1.5
4,438,587	-		PP_3933	0.42	-3.5
4,438,688	+		PP_3933	0.55	-2.5
4,438,689	-		PP_3933	0.55	+1.5
4,438,834	-		PP_3933	0.74	-3.2
4,439,019	+				-2.0
4,439,232	-		PP_3934	0.15	+1.1
4,439,512	-		PP_3934	0.45	+0.2
4,439,543	+		PP_3934	0.48	-0.6
4,439,543	+		PP_3934	0.48	-0.6
4,439,628	+		PP_3934	0.57	-0.0
4,439,628	+		PP_3934	0.57	-1.3
4,439,629	-		PP_3934	0.57	-1.0
4,439,643	+		PP_3934	0.59	-2.9
4,439,643	+		PP_3934	0.59	-3.0
4,439,643	+		PP_3934	0.59	-0.4
4,439,644	-		PP_3934	0.59	-1.3
4,439,956	+				+0.9
4,439,956	+				+0.7
4,439,957	-				-0.6
4,439,957	-				-0.9
4,439,957	-				-0.8
4,439,957	-				+0.0
4,439,957	-				-2.6
4,439,957	-				+0.9
4,439,957	-				+0.1
4,439,957	-				-0.0
4,439,958	+				-2.0