Strain Fitness in Pseudomonas putida KT2440 around PP_3849

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,371,992	-				-0.5
4,371,995	+				-2.2
4,371,996	-				+0.7
4,371,996	-				+1.7
4,371,996	-				-0.0
4,372,031	-				-1.7
4,372,157	+				-0.1
4,372,158	-				+1.5
4,372,161	+				+0.2
4,372,161	+				+0.7
4,372,161	+				+0.6
4,372,162	-				+1.5
4,372,300	-				-1.0
4,372,310	+				+1.5
4,372,310	+				+1.1
4,372,333	-				+0.3
4,372,366	+				-0.9
4,372,366	+				+0.5
4,372,367	-				+0.8
4,372,564	+				-0.8
4,372,565	-				-1.1
4,372,644	-				+0.5
4,372,659	+				+0.7
4,372,780	-				+1.0
4,372,820	-				+0.8
4,372,827	-				+2.1
4,372,890	+				+1.6
4,373,055	+				+2.4
4,373,172	+				+0.8
4,373,404	-		PP_3849	0.21	+0.4
4,373,476	-		PP_3849	0.25	+0.7
4,373,498	-		PP_3849	0.26	-0.6
4,373,537	-		PP_3849	0.28	+0.4
4,373,565	-		PP_3849	0.29	+0.7
4,373,566	+		PP_3849	0.29	+1.1
4,373,567	-				+1.5
4,373,568	+		PP_3849	0.29	+1.6
4,373,577	+		PP_3849	0.30	+0.9
4,373,617	+		PP_3849	0.32	-0.1
4,373,618	-		PP_3849	0.32	+2.1
4,373,648	+		PP_3849	0.34	+0.8
4,373,649	-		PP_3849	0.34	-0.9
4,373,664	+		PP_3849	0.34	+0.4
4,373,665	-		PP_3849	0.34	-0.9
4,373,736	-		PP_3849	0.38	+1.1
4,373,784	+		PP_3849	0.40	+0.6
4,373,790	-		PP_3849	0.41	-1.5
4,373,869	+		PP_3849	0.45	+1.2
4,373,870	-		PP_3849	0.45	-0.3
4,373,870	-		PP_3849	0.45	-0.4
4,373,870	-		PP_3849	0.45	+1.8
4,373,872	+		PP_3849	0.45	-1.2
4,373,872	+		PP_3849	0.45	+0.9
4,373,873	-		PP_3849	0.45	-2.3
4,373,873	-		PP_3849	0.45	+1.7
4,373,966	-		PP_3849	0.50	+0.8
4,374,003	+		PP_3849	0.52	+0.7
4,374,115	+				+0.5
4,374,116	-		PP_3849	0.57	+0.8
4,374,116	-		PP_3849	0.57	+1.0
4,374,199	-		PP_3849	0.61	+0.4
4,374,212	-		PP_3849	0.62	-0.3
4,374,251	-		PP_3849	0.64	+1.0
4,374,361	+		PP_3849	0.70	-1.0
4,374,364	+		PP_3849	0.70	-1.7
4,374,364	+		PP_3849	0.70	+0.9
4,374,473	+		PP_3849	0.75	-2.3
4,374,546	+		PP_3849	0.79	-1.0
4,374,546	+		PP_3849	0.79	-0.9
4,374,694	-		PP_3849	0.87	+0.3
4,374,925	-				+1.2
4,374,972	+				-0.4
4,375,032	-				+1.7
4,375,032	-				-0.1
4,375,032	-				-1.1
4,375,037	+				+1.0
4,375,062	+				-0.3
4,375,063	-				+2.1
4,375,178	+		PP_3850	0.54	+0.6
4,375,179	-		PP_3850	0.54	+1.1
4,375,222	+		PP_3850	0.70	-0.5
4,375,223	-		PP_3850	0.71	-1.7
4,375,225	+		PP_3850	0.72	+1.7
4,375,225	+		PP_3850	0.72	+1.0
4,375,225	+		PP_3850	0.72	+0.1
4,375,226	-		PP_3850	0.72	+0.4
4,375,309	+		PP_5637	0.12	+0.1
4,375,309	+		PP_5637	0.12	+3.5
4,375,309	+		PP_5637	0.12	+0.2
4,375,311	+		PP_5637	0.13	+0.4
4,375,311	+		PP_5637	0.13	+0.6
4,375,311	+		PP_5637	0.13	-1.9
4,375,311	+		PP_5637	0.13	-0.2
4,375,311	+		PP_5637	0.13	+0.1
4,375,311	+		PP_5637	0.13	+1.6
4,375,311	+		PP_5637	0.13	+0.4
4,375,311	+		PP_5637	0.13	-0.8
4,375,311	+		PP_5637	0.13	-1.9
4,375,312	-		PP_5637	0.13	+0.1
4,375,312	-		PP_5637	0.13	+1.4
4,375,312	-		PP_5637	0.13	+2.2
4,375,312	-		PP_5637	0.13	+1.0
4,375,312	-		PP_5637	0.13	-2.4
4,375,312	-		PP_5637	0.13	-0.2
4,375,312	-		PP_5637	0.13	+1.1
4,375,312	-		PP_5637	0.13	+0.3
4,375,312	-		PP_5637	0.13	-2.6
4,375,332	+		PP_5637	0.21	-0.4
4,375,332	+		PP_5637	0.21	+0.9
4,375,397	+		PP_5637	0.46	+0.5
4,375,398	-		PP_5637	0.47	+0.3
4,375,421	+		PP_5637	0.55	+1.3
4,375,421	+		PP_5637	0.55	+3.1
4,375,567	+				+1.6
4,375,567	+				+0.6
4,375,567	+				-0.7
4,375,567	+				+1.6
4,375,567	+				+0.2
4,375,568	-				-0.2
4,375,568	-				+0.2
4,375,568	-				-0.1
4,375,568	-				+0.9
4,375,568	-				-1.2
4,375,606	-				-2.2
4,375,607	+				-2.1
4,375,608	-				+0.9
4,375,790	+		PP_3851	0.45	+1.7
4,375,901	+		PP_3851	0.79	+0.3
4,375,901	+		PP_3851	0.79	+1.1
4,375,902	-		PP_3851	0.79	+1.3
4,375,902	-		PP_3851	0.79	-2.0
4,375,903	+		PP_3851	0.80	-0.4
4,375,903	+				+0.5
4,375,903	+		PP_3851	0.80	-1.7
4,375,903	+		PP_3851	0.80	+1.6
4,375,904	-		PP_3851	0.80	-0.9
4,375,904	-		PP_3851	0.80	+0.7
4,375,904	-		PP_3851	0.80	-1.3
4,375,904	-		PP_3851	0.80	+1.0
4,375,921	+		PP_3851	0.85	+1.7
4,375,922	-		PP_3851	0.85	+0.5
4,375,947	+				+0.4
4,375,948	-				+1.0