Strain Fitness in Pseudomonas putida KT2440 around PP_3823

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,350,096	+				-0.2
4,350,097	-				-1.6
4,350,097	-				+0.4
4,350,097	-				-2.3
4,350,097	-				+1.0
4,350,097	-				+3.1
4,350,191	-				+1.3
4,350,229	+				-0.1
4,350,229	+				+1.0
4,350,229	+				+1.2
4,350,230	-				+0.6
4,350,234	+				-1.0
4,350,234	+				+0.1
4,350,234	+				-0.2
4,350,293	+		PP_3822	0.12	-0.2
4,350,293	+		PP_3822	0.12	+1.0
4,350,397	-		PP_3822	0.23	+0.7
4,350,397	-		PP_3822	0.23	+0.9
4,350,418	+		PP_3822	0.25	-1.0
4,350,450	+		PP_3822	0.29	-1.3
4,350,450	+		PP_3822	0.29	+1.3
4,350,451	-		PP_3822	0.29	+2.1
4,350,479	+		PP_3822	0.32	+2.4
4,350,479	+		PP_3822	0.32	+1.0
4,350,479	+				-1.1
4,350,479	+		PP_3822	0.32	-1.6
4,350,479	+		PP_3822	0.32	+0.3
4,350,479	+		PP_3822	0.32	-0.7
4,350,479	+		PP_3822	0.32	-2.1
4,350,479	+		PP_3822	0.32	-2.1
4,350,480	-		PP_3822	0.32	-1.4
4,350,480	-		PP_3822	0.32	+2.7
4,350,480	-		PP_3822	0.32	-0.7
4,350,480	-		PP_3822	0.32	-1.7
4,350,480	-		PP_3822	0.32	+0.9
4,350,480	-		PP_3822	0.32	-0.9
4,350,480	-		PP_3822	0.32	+0.4
4,350,483	+		PP_3822	0.33	-1.8
4,350,483	+		PP_3822	0.33	-0.6
4,350,483	+		PP_3822	0.33	+1.0
4,350,484	-		PP_3822	0.33	+0.1
4,350,484	-		PP_3822	0.33	+0.3
4,350,655	-		PP_3822	0.51	+2.1
4,350,655	-		PP_3822	0.51	-1.8
4,350,660	+		PP_3822	0.52	-0.8
4,350,660	+		PP_3822	0.52	+1.4
4,350,661	-		PP_3822	0.52	+1.4
4,350,661	-		PP_3822	0.52	+0.2
4,350,789	+		PP_3822	0.66	-0.2
4,350,799	-		PP_3822	0.67	+0.5
4,350,853	+		PP_3822	0.73	-0.2
4,350,854	-		PP_3822	0.73	+0.1
4,350,854	-		PP_3822	0.73	-0.4
4,350,950	-		PP_3822	0.84	-2.0
4,351,250	+		PP_3823	0.24	+0.8
4,351,250	+		PP_3823	0.24	-1.7
4,351,250	+		PP_3823	0.24	+0.0
4,351,356	-		PP_3823	0.40	-1.3
4,351,439	+		PP_3823	0.52	-2.0
4,351,439	+		PP_3823	0.52	-0.2
4,351,440	-		PP_3823	0.53	+0.3
4,351,440	-		PP_3823	0.53	-2.0
4,351,440	-		PP_3823	0.53	-2.2
4,351,444	-		PP_3823	0.53	-2.8
4,351,547	+		PP_3823	0.69	+1.0
4,351,547	+		PP_3823	0.69	-0.5
4,351,887	-		PP_3824	0.17	-0.3
4,352,055	+		PP_3824	0.61	+0.3
4,352,055	+		PP_3824	0.61	-1.1
4,352,056	-		PP_3824	0.61	-1.0
4,352,286	+				-3.6
4,352,287	-				+0.3
4,352,287	-				-1.7
4,352,385	-		PP_3825	0.14	+0.0
4,352,385	-		PP_3825	0.14	+0.1
4,352,385	-		PP_3825	0.14	-1.8
4,352,471	+		PP_3825	0.42	+1.1
4,352,471	+		PP_3825	0.42	-0.9
4,352,472	-		PP_3825	0.43	-1.5
4,352,472	-		PP_3825	0.43	+0.5
4,352,476	-		PP_3825	0.44	-1.3
4,352,476	-		PP_3825	0.44	-2.6
4,352,643	+				+0.7
4,352,643	+				+2.8
4,352,643	+				-2.7
4,352,644	-				-0.4
4,352,644	-				-0.1
4,352,644	-				+0.5
4,352,671	+		PP_5633	0.11	-1.5
4,352,672	-		PP_5633	0.11	+1.3
4,352,672	-		PP_5633	0.11	-0.4
4,352,672	-		PP_5633	0.11	+1.5
4,352,672	-		PP_5633	0.11	+0.3
4,352,683	+		PP_5633	0.18	+0.5
4,352,684	-		PP_5633	0.18	-0.4