Experiment: P. putida PUT 7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3802 and PP_3803 overlap by 1 nucleotides PP_3803 and PP_3804 overlap by 4 nucleotides PP_3804 and PP_3805 are separated by 83 nucleotides
PP_3802: PP_3802 - putative Cation ABC transporter, ATP-binding protein, at 4,330,555 to 4,331,301
_3802
PP_3803: PP_3803 - putative Cation ABC transporter, permease protein, at 4,331,301 to 4,332,200
_3803
PP_3804: PP_3804 - conserved exported protein of unknown function, at 4,332,197 to 4,333,060
_3804
PP_3805: PP_3805 - lipoprotein required for swarming, at 4,333,144 to 4,334,196
_3805
Position (kb) 4332
4333
4334 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4331.352 kb on + strand at 4331.352 kb on + strand at 4331.353 kb on - strand at 4331.353 kb on - strand at 4331.373 kb on + strand at 4331.373 kb on + strand at 4331.374 kb on - strand at 4331.374 kb on - strand at 4331.535 kb on + strand, within PP_3803 at 4331.535 kb on + strand, within PP_3803 at 4331.535 kb on + strand, within PP_3803 at 4331.535 kb on + strand, within PP_3803 at 4331.535 kb on + strand at 4331.538 kb on - strand, within PP_3803 at 4331.538 kb on - strand, within PP_3803 at 4331.610 kb on - strand, within PP_3803 at 4331.627 kb on + strand, within PP_3803 at 4331.750 kb on + strand, within PP_3803 at 4331.817 kb on + strand, within PP_3803 at 4331.818 kb on - strand, within PP_3803 at 4331.892 kb on + strand, within PP_3803 at 4331.893 kb on - strand, within PP_3803 at 4332.578 kb on + strand, within PP_3804 at 4332.578 kb on + strand, within PP_3804 at 4332.578 kb on + strand, within PP_3804 at 4332.578 kb on + strand, within PP_3804 at 4332.578 kb on + strand, within PP_3804 at 4332.578 kb on + strand, within PP_3804 at 4332.578 kb on + strand, within PP_3804 at 4332.579 kb on - strand, within PP_3804 at 4332.579 kb on - strand, within PP_3804 at 4332.588 kb on - strand, within PP_3804 at 4332.588 kb on - strand, within PP_3804 at 4332.794 kb on + strand, within PP_3804 at 4333.017 kb on + strand at 4333.017 kb on + strand at 4333.017 kb on + strand at 4333.018 kb on - strand at 4333.166 kb on + strand at 4333.167 kb on - strand at 4333.372 kb on - strand, within PP_3805 at 4333.372 kb on - strand, within PP_3805 at 4333.554 kb on - strand, within PP_3805 at 4333.568 kb on + strand, within PP_3805 at 4333.568 kb on + strand, within PP_3805 at 4333.568 kb on + strand, within PP_3805 at 4333.569 kb on - strand, within PP_3805 at 4333.607 kb on + strand, within PP_3805 at 4333.607 kb on + strand, within PP_3805 at 4333.607 kb on + strand, within PP_3805 at 4333.607 kb on + strand, within PP_3805 at 4333.608 kb on - strand, within PP_3805 at 4333.608 kb on - strand, within PP_3805 at 4333.608 kb on - strand, within PP_3805 at 4333.661 kb on + strand, within PP_3805 at 4333.787 kb on + strand, within PP_3805 at 4333.787 kb on + strand, within PP_3805 at 4333.838 kb on + strand, within PP_3805 at 4333.838 kb on + strand, within PP_3805 at 4333.896 kb on + strand, within PP_3805 at 4333.896 kb on + strand, within PP_3805 at 4333.897 kb on - strand, within PP_3805 at 4333.897 kb on - strand, within PP_3805
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1 remove 4,331,352 + +1.4 4,331,352 + -2.8 4,331,353 - -0.1 4,331,353 - +1.9 4,331,373 + -0.1 4,331,373 + -0.5 4,331,374 - +1.4 4,331,374 - -3.3 4,331,535 + PP_3803 0.26 -0.6 4,331,535 + PP_3803 0.26 +1.0 4,331,535 + PP_3803 0.26 -0.2 4,331,535 + PP_3803 0.26 -2.2 4,331,535 + +1.4 4,331,538 - PP_3803 0.26 +1.9 4,331,538 - PP_3803 0.26 -0.1 4,331,610 - PP_3803 0.34 -1.4 4,331,627 + PP_3803 0.36 -0.5 4,331,750 + PP_3803 0.50 -0.3 4,331,817 + PP_3803 0.57 -0.2 4,331,818 - PP_3803 0.57 -0.2 4,331,892 + PP_3803 0.66 -2.6 4,331,893 - PP_3803 0.66 +2.6 4,332,578 + PP_3804 0.44 -3.3 4,332,578 + PP_3804 0.44 -1.2 4,332,578 + PP_3804 0.44 -2.0 4,332,578 + PP_3804 0.44 -2.5 4,332,578 + PP_3804 0.44 +0.4 4,332,578 + PP_3804 0.44 +2.5 4,332,578 + PP_3804 0.44 +1.4 4,332,579 - PP_3804 0.44 -1.1 4,332,579 - PP_3804 0.44 -1.9 4,332,588 - PP_3804 0.45 -0.9 4,332,588 - PP_3804 0.45 -2.4 4,332,794 + PP_3804 0.69 -2.6 4,333,017 + +0.5 4,333,017 + -3.6 4,333,017 + -0.2 4,333,018 - -0.8 4,333,166 + +0.3 4,333,167 - -2.1 4,333,372 - PP_3805 0.22 -2.0 4,333,372 - PP_3805 0.22 +0.3 4,333,554 - PP_3805 0.39 -2.0 4,333,568 + PP_3805 0.40 +0.6 4,333,568 + PP_3805 0.40 -2.8 4,333,568 + PP_3805 0.40 -0.8 4,333,569 - PP_3805 0.40 -0.3 4,333,607 + PP_3805 0.44 -2.6 4,333,607 + PP_3805 0.44 +0.4 4,333,607 + PP_3805 0.44 +0.5 4,333,607 + PP_3805 0.44 -0.4 4,333,608 - PP_3805 0.44 -1.4 4,333,608 - PP_3805 0.44 -0.3 4,333,608 - PP_3805 0.44 -0.4 4,333,661 + PP_3805 0.49 -2.9 4,333,787 + PP_3805 0.61 +0.1 4,333,787 + PP_3805 0.61 -1.0 4,333,838 + PP_3805 0.66 +1.3 4,333,838 + PP_3805 0.66 -0.1 4,333,896 + PP_3805 0.71 -1.0 4,333,896 + PP_3805 0.71 -2.8 4,333,897 - PP_3805 0.72 -2.9 4,333,897 - PP_3805 0.72 -0.7
Or see this region's nucleotide sequence