Strain Fitness in Pseudomonas putida KT2440 around PP_3791

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,319,160	+				+1.4
4,319,160	+		PP_3790	0.16	+1.0
4,319,207	+		PP_3790	0.22	+0.1
4,319,254	+		PP_3790	0.28	-2.8
4,319,255	-		PP_3790	0.28	-0.6
4,319,255	-		PP_3790	0.28	-3.6
4,319,268	-		PP_3790	0.29	-1.6
4,319,285	-		PP_3790	0.32	+0.9
4,319,310	+		PP_3790	0.35	+0.8
4,319,311	-		PP_3790	0.35	+0.7
4,319,343	+		PP_3790	0.39	-0.5
4,319,344	-		PP_3790	0.39	+0.4
4,319,398	+		PP_3790	0.46	+2.4
4,319,631	-		PP_3790	0.74	-3.7
4,319,694	+		PP_3790	0.82	+1.8
4,319,694	+		PP_3790	0.82	-3.6
4,319,694	+		PP_3790	0.82	-0.9
4,319,694	+		PP_3790	0.82	-0.4
4,319,695	-		PP_3790	0.82	-0.4
4,319,695	-		PP_3790	0.82	-1.5
4,319,695	-		PP_3790	0.82	+1.2
4,319,695	-		PP_3790	0.82	+1.4
4,319,695	-		PP_3790	0.82	+0.5
4,319,695	-		PP_3790	0.82	+0.8
4,319,756	+				+0.9
4,319,782	-				-1.5
4,319,799	-				-2.5
4,319,867	+				+1.7
4,319,867	+				-1.0
4,319,868	-				-0.6
4,319,901	-				-0.2
4,319,901	-				-1.1
4,319,901	-				+0.3
4,319,901	-				+0.4
4,319,904	+				+0.3
4,319,904	+				+0.9
4,319,904	+				-2.7
4,319,904	+				+1.2
4,319,940	+				+1.2
4,320,003	+				+2.0
4,320,004	-				+0.2
4,320,021	+				-0.9
4,320,022	-				-0.3
4,320,115	-				-0.7
4,320,115	-				+0.3
4,320,115	-				+1.4
4,320,193	+				+1.3
4,320,218	+		PP_3791	0.13	+0.8
4,320,219	-		PP_3791	0.13	+0.6
4,320,219	-		PP_3791	0.13	-1.2
4,320,266	-		PP_3791	0.20	-1.6
4,320,284	+		PP_3791	0.23	+0.3
4,320,285	-		PP_3791	0.23	-3.3
4,320,285	-		PP_3791	0.23	-2.5
4,320,285	-		PP_3791	0.23	-0.3
4,320,307	+		PP_3791	0.27	-0.2
4,320,307	+		PP_3791	0.27	+0.6
4,320,307	+		PP_3791	0.27	+0.5
4,320,307	+		PP_3791	0.27	-0.6
4,320,307	+		PP_3791	0.27	-2.6
4,320,307	+		PP_3791	0.27	+1.4
4,320,308	-		PP_3791	0.27	-0.6
4,320,308	-		PP_3791	0.27	+0.3
4,320,308	-		PP_3791	0.27	-2.7
4,320,308	-		PP_3791	0.27	+1.0
4,320,311	+		PP_3791	0.28	+0.4
4,320,311	+		PP_3791	0.28	+0.5
4,320,311	+		PP_3791	0.28	-0.9
4,320,311	+		PP_3791	0.28	+1.4
4,320,311	+		PP_3791	0.28	-1.1
4,320,312	-		PP_3791	0.28	-3.2
4,320,312	-		PP_3791	0.28	-2.4
4,320,321	+		PP_3791	0.29	-4.4
4,320,322	-		PP_3791	0.29	-0.2
4,320,329	+		PP_3791	0.30	-1.0
4,320,330	-		PP_3791	0.31	-1.0
4,320,330	-		PP_3791	0.31	-2.4
4,320,362	-		PP_3791	0.36	-1.5
4,320,441	+		PP_3791	0.48	-1.1
4,320,442	-		PP_3791	0.48	+1.8
4,320,453	+		PP_3791	0.50	-1.6
4,320,453	+		PP_3791	0.50	-3.2
4,320,476	+		PP_3791	0.54	-2.1
4,320,477	-		PP_3791	0.54	-0.5
4,320,490	-		PP_3791	0.56	-2.8
4,320,591	+		PP_3791	0.72	-1.4
4,320,591	+		PP_3791	0.72	-1.4
4,320,591	+		PP_3791	0.72	-2.8
4,320,630	+		PP_3791	0.78	+0.2
4,320,664	-		PP_3791	0.84	+1.5
4,320,680	+		PP_3791	0.86	+2.0
4,320,681	-		PP_3791	0.87	-0.1
4,320,785	+				-1.0
4,320,854	+				+0.7
4,320,854	+				+0.1
4,320,876	-				-2.0
4,320,904	-				-0.9
4,320,938	+				-3.3
4,320,939	-				-3.1
4,320,942	+				+0.1
4,320,942	+				+0.5
4,320,943	-				-2.3
4,320,943	-				+1.9
4,320,972	+				-0.3
4,320,972	+				+1.7
4,320,973	-				-2.7
4,320,973	-				-0.1
4,321,047	+				-0.6
4,321,047	+				+0.8
4,321,047	+				-0.6
4,321,104	+				+0.6
4,321,104	+				-3.0
4,321,104	+				-0.4
4,321,105	-				+0.7
4,321,105	-				+0.8
4,321,105	-				-0.5
4,321,105	-				+0.4
4,321,117	-				+1.1
4,321,149	+				-0.3
4,321,149	+				-0.3
4,321,149	+				-2.4
4,321,230	+				+1.1
4,321,292	+		PP_5629	0.19	-3.8
4,321,295	+		PP_5629	0.20	+1.7
4,321,295	+		PP_5629	0.20	+1.3
4,321,296	-		PP_5629	0.20	+0.7
4,321,296	-		PP_5629	0.20	+1.4
4,321,330	+		PP_5629	0.26	+0.1
4,321,331	-				+3.2
4,321,341	-		PP_5629	0.28	+0.7
4,321,448	+		PP_5629	0.47	+0.7
4,321,448	+		PP_5629	0.47	-2.6
4,321,448	+		PP_5629	0.47	+1.2
4,321,449	-		PP_5629	0.47	-2.9
4,321,449	-		PP_5629	0.47	-1.4
4,321,574	-		PP_5629	0.69	+1.4
4,321,612	+		PP_5629	0.75	+0.6
4,321,612	+		PP_5629	0.75	-0.9
4,321,613	-		PP_5629	0.76	-1.5
4,321,613	-		PP_5629	0.76	-2.3
4,321,636	+		PP_5629	0.80	+1.0
4,321,636	+		PP_5629	0.80	-3.2
4,321,636	+		PP_5629	0.80	+0.1
4,321,637	-		PP_5629	0.80	+0.4
4,321,637	-		PP_5629	0.80	-0.2
4,321,637	-		PP_5629	0.80	+0.2
4,321,661	+		PP_5629	0.84	-1.5
4,321,662	-		PP_5629	0.84	+0.2
4,321,697	-				-2.6
4,321,698	+				+1.1
4,321,698	+				-0.3
4,321,732	+				-1.4
4,321,732	+				-2.8
4,321,733	-				+0.8
4,321,733	-				+0.7