Strain Fitness in Pseudomonas putida KT2440 around PP_3758

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,285,601	+		PP_3756	0.25	+1.0
4,285,601	+		PP_3756	0.25	+0.1
4,285,634	+		PP_3756	0.30	+0.3
4,285,655	+		PP_3756	0.34	+0.6
4,285,655	+		PP_3756	0.34	+1.6
4,285,655	+		PP_3756	0.34	-0.3
4,285,847	+		PP_3756	0.67	-1.5
4,285,847	+		PP_3756	0.67	+1.2
4,285,847	+		PP_3756	0.67	-0.9
4,285,924	-		PP_3756	0.80	-2.0
4,286,123	-				-0.1
4,286,258	-		PP_3757	0.45	+0.3
4,286,373	+		PP_3757	0.76	-0.9
4,286,374	-				-0.7
4,286,391	+		PP_3757	0.80	-1.4
4,286,391	+		PP_3757	0.80	-3.3
4,286,484	+				-3.1
4,286,484	+				+1.3
4,286,484	+				-1.4
4,286,484	+				-1.1
4,286,484	+				+0.3
4,286,485	-				-1.3
4,286,510	+				-1.3
4,286,511	-				-0.0
4,286,651	+		PP_3758	0.12	-1.1
4,286,651	+		PP_3758	0.12	-3.5
4,286,651	+		PP_3758	0.12	-0.3
4,286,651	+		PP_3758	0.12	-0.4
4,286,652	-		PP_3758	0.12	-0.7
4,286,652	-		PP_3758	0.12	-0.6
4,286,652	-		PP_3758	0.12	-0.8
4,286,652	-		PP_3758	0.12	+0.6
4,286,652	-		PP_3758	0.12	+0.7
4,286,854	+		PP_3758	0.28	-2.9
4,286,854	+		PP_3758	0.28	-2.4
4,286,855	-		PP_3758	0.28	+1.1
4,286,855	-		PP_3758	0.28	-2.1
4,286,855	-		PP_3758	0.28	-1.2
4,287,193	-		PP_3758	0.56	-2.8
4,287,437	+		PP_3758	0.76	-1.0
4,287,453	-		PP_3758	0.77	-2.9
4,287,731	-				-1.8
4,287,742	+				-0.3
4,287,743	-				-0.7
4,287,782	+				-0.6
4,287,782	+				-2.9
4,287,788	+		PP_3759	0.10	-1.2
4,287,788	+		PP_3759	0.10	-0.4
4,287,789	-		PP_3759	0.10	-0.0
4,287,889	+		PP_3759	0.28	-1.5
4,287,890	-		PP_3759	0.28	+0.8
4,287,890	-		PP_3759	0.28	-2.1
4,287,956	-		PP_3759	0.39	-3.0
4,288,081	+		PP_3759	0.61	-3.1
4,288,081	+		PP_3759	0.61	+0.7
4,288,081	+		PP_3759	0.61	-0.4
4,288,081	+		PP_3759	0.61	+0.4
4,288,081	+		PP_3759	0.61	-1.0
4,288,081	+		PP_3759	0.61	+0.9
4,288,082	-		PP_3759	0.61	+1.4
4,288,082	-		PP_3759	0.61	+0.6
4,288,082	-		PP_3759	0.61	-2.0
4,288,082	-		PP_3759	0.61	-2.0
4,288,082	-		PP_3759	0.61	-1.4
4,288,082	-		PP_3759	0.61	+1.3
4,288,126	-		PP_3759	0.69	-1.6
4,288,309	+				+0.2
4,288,309	+				-1.0
4,288,384	+		PP_3760	0.10	+0.6
4,288,596	+		PP_3760	0.36	-0.2
4,288,596	+		PP_3760	0.36	-0.2
4,288,596	+		PP_3760	0.36	+0.0
4,288,596	+		PP_3760	0.36	-2.0
4,288,596	+		PP_3760	0.36	-1.0
4,288,599	+		PP_3760	0.36	-2.0
4,288,671	+		PP_3760	0.45	-0.8
4,288,723	-		PP_3760	0.51	+1.3