Experiment: P. putida PUT 7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3741 and PP_3742 are separated by 42 nucleotides PP_3742 and PP_3743 are separated by 281 nucleotides PP_3743 and PP_3744 are separated by 60 nucleotides
PP_3741: PP_3741 - transpeptidase (penicillin-binding protein 2), at 4,269,861 to 4,271,756
_3741
PP_3742: PP_3742 - Glutathione S-transferase family protein, at 4,271,799 to 4,272,425
_3742
PP_3743: PP_3743 - conserved exported protein of unknown function, at 4,272,707 to 4,273,024
_3743
PP_3744: PP_3744 - transcriptional dual regulator GlcC-Glycolate, at 4,273,085 to 4,273,876
_3744
Position (kb) 4272
4273
4274 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4271.827 kb on + strand at 4271.828 kb on - strand at 4271.930 kb on - strand, within PP_3742 at 4272.009 kb on - strand, within PP_3742 at 4272.009 kb on - strand, within PP_3742 at 4272.014 kb on - strand, within PP_3742 at 4272.100 kb on + strand, within PP_3742 at 4272.101 kb on - strand, within PP_3742 at 4272.103 kb on + strand, within PP_3742 at 4272.103 kb on + strand, within PP_3742 at 4272.104 kb on - strand, within PP_3742 at 4272.104 kb on - strand, within PP_3742 at 4272.104 kb on - strand, within PP_3742 at 4272.104 kb on - strand, within PP_3742 at 4272.116 kb on + strand, within PP_3742 at 4272.116 kb on + strand, within PP_3742 at 4272.380 kb on - strand at 4272.380 kb on - strand at 4272.380 kb on - strand at 4272.633 kb on + strand at 4272.633 kb on + strand at 4272.655 kb on + strand at 4272.656 kb on - strand at 4272.672 kb on - strand at 4272.672 kb on - strand at 4272.692 kb on - strand at 4272.717 kb on + strand at 4272.718 kb on - strand at 4272.718 kb on - strand at 4272.806 kb on - strand, within PP_3743 at 4272.822 kb on - strand, within PP_3743 at 4272.911 kb on + strand, within PP_3743 at 4272.911 kb on + strand, within PP_3743 at 4272.911 kb on + strand, within PP_3743 at 4272.912 kb on - strand, within PP_3743 at 4272.912 kb on - strand, within PP_3743 at 4272.912 kb on - strand, within PP_3743 at 4272.912 kb on - strand, within PP_3743 at 4273.073 kb on + strand at 4273.074 kb on - strand at 4273.102 kb on + strand at 4273.103 kb on - strand at 4273.163 kb on + strand at 4273.163 kb on + strand at 4273.174 kb on + strand, within PP_3744 at 4273.174 kb on + strand, within PP_3744 at 4273.174 kb on + strand, within PP_3744 at 4273.175 kb on - strand, within PP_3744 at 4273.175 kb on - strand, within PP_3744 at 4273.175 kb on - strand, within PP_3744 at 4273.282 kb on - strand, within PP_3744 at 4273.343 kb on - strand, within PP_3744 at 4273.361 kb on - strand, within PP_3744 at 4273.361 kb on - strand, within PP_3744 at 4273.479 kb on - strand, within PP_3744 at 4273.606 kb on + strand, within PP_3744 at 4273.606 kb on + strand, within PP_3744 at 4273.884 kb on + strand at 4273.885 kb on + strand at 4273.885 kb on - strand at 4273.917 kb on + strand at 4273.917 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1 remove 4,271,827 + +1.2 4,271,828 - +1.2 4,271,930 - PP_3742 0.21 +1.0 4,272,009 - PP_3742 0.33 +2.2 4,272,009 - PP_3742 0.33 -2.0 4,272,014 - PP_3742 0.34 +0.1 4,272,100 + PP_3742 0.48 +1.2 4,272,101 - PP_3742 0.48 +1.8 4,272,103 + PP_3742 0.48 -0.3 4,272,103 + PP_3742 0.48 -1.0 4,272,104 - PP_3742 0.49 -0.2 4,272,104 - PP_3742 0.49 +0.1 4,272,104 - PP_3742 0.49 -2.0 4,272,104 - PP_3742 0.49 +1.2 4,272,116 + PP_3742 0.51 +0.1 4,272,116 + PP_3742 0.51 +0.2 4,272,380 - -0.5 4,272,380 - -1.7 4,272,380 - -1.5 4,272,633 + -0.3 4,272,633 + -2.0 4,272,655 + -0.5 4,272,656 - -1.6 4,272,672 - +0.2 4,272,672 - -2.8 4,272,692 - +0.4 4,272,717 + -3.3 4,272,718 - +0.2 4,272,718 - -1.6 4,272,806 - PP_3743 0.31 -0.5 4,272,822 - PP_3743 0.36 -0.3 4,272,911 + PP_3743 0.64 -0.5 4,272,911 + PP_3743 0.64 -0.7 4,272,911 + PP_3743 0.64 +0.0 4,272,912 - PP_3743 0.64 -0.5 4,272,912 - PP_3743 0.64 -2.8 4,272,912 - PP_3743 0.64 -0.3 4,272,912 - PP_3743 0.64 -3.1 4,273,073 + -0.3 4,273,074 - -1.9 4,273,102 + +0.5 4,273,103 - +0.2 4,273,163 + -0.8 4,273,163 + -2.3 4,273,174 + PP_3744 0.11 +0.9 4,273,174 + PP_3744 0.11 -0.1 4,273,174 + PP_3744 0.11 +1.9 4,273,175 - PP_3744 0.11 -1.3 4,273,175 - PP_3744 0.11 -1.9 4,273,175 - PP_3744 0.11 -1.0 4,273,282 - PP_3744 0.25 -3.7 4,273,343 - PP_3744 0.33 -2.9 4,273,361 - PP_3744 0.35 -1.1 4,273,361 - PP_3744 0.35 -2.4 4,273,479 - PP_3744 0.50 -0.1 4,273,606 + PP_3744 0.66 -2.4 4,273,606 + PP_3744 0.66 +0.5 4,273,884 + -1.7 4,273,885 + -1.9 4,273,885 - +0.4 4,273,917 + -3.3 4,273,917 + -1.3
Or see this region's nucleotide sequence