Strain Fitness in Pseudomonas putida KT2440 around PP_3735

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,261,946	-		PP_3734	0.67	-1.7
4,262,402	-		PP_3734	0.85	-2.8
4,262,402	-		PP_3734	0.85	-0.4
4,262,402	-		PP_3734	0.85	-3.0
4,262,402	-		PP_3734	0.85	+1.3
4,262,529	+				-2.9
4,262,529	+				+1.4
4,262,529	+				-1.3
4,262,529	+				+0.3
4,262,529	+				-1.0
4,262,529	+				-2.0
4,262,530	-				-0.4
4,262,530	-				-2.3
4,262,613	+				+0.8
4,262,613	+				-0.4
4,262,614	-				-0.7
4,262,614	-				-0.2
4,262,614	-				+0.0
4,263,065	+		PP_3735	0.46	-1.2
4,263,066	-		PP_3735	0.46	-2.7
4,263,066	-		PP_3735	0.46	-0.3
4,263,114	+		PP_3735	0.53	-0.0
4,263,114	+		PP_3735	0.53	-1.5
4,263,114	+				+1.3
4,263,114	+		PP_3735	0.53	-2.5
4,263,152	+		PP_3735	0.59	-2.3
4,263,152	+		PP_3735	0.59	+0.3
4,263,153	-		PP_3735	0.59	-0.7
4,263,243	+		PP_3735	0.72	-0.8
4,263,243	+		PP_3735	0.72	+0.0
4,263,291	+		PP_3735	0.80	-2.6
4,263,404	+				-2.0
4,263,422	-				-1.8
4,263,457	+				-3.0
4,263,464	-				-1.8
4,263,464	-				-0.6
4,263,464	-				-3.2
4,263,464	-				-1.7
4,263,464	-				-0.5
4,263,464	-				-1.4
4,263,464	-				-2.6
4,263,464	-				-1.1
4,263,624	+				-1.3
4,263,624	+				-0.7
4,263,624	+				+0.9
4,263,624	+				+0.7
4,263,624	+				+0.8
4,263,624	+				+0.0
4,263,624	+				-1.3
4,263,624	+				-2.6
4,263,624	+				-0.2
4,263,624	+				-2.0
4,263,624	+				-2.2
4,263,624	+				-0.7
4,263,624	+				+0.6
4,263,624	+				+1.2
4,263,624	+				-1.7
4,263,624	+				+0.9
4,263,624	+				-1.9
4,263,625	-				-2.9
4,263,625	-				-1.5
4,263,625	-				-2.8
4,263,625	-				-2.8
4,263,625	-				-1.0
4,263,625	-				-0.3
4,263,625	-				-2.8
4,263,625	-				-2.8
4,263,625	-				-1.8
4,263,625	-				-2.6
4,263,625	-				-2.9
4,263,625	-				-2.8
4,263,625	-				-0.2
4,263,625	-				+0.2
4,263,625	-				+0.3
4,263,625	-				-1.0
4,263,712	-				-3.4
4,263,729	+				-2.0
4,263,879	+		PP_3736	0.16	+0.7
4,264,012	-		PP_3736	0.28	-3.1
4,264,105	-		PP_3736	0.37	-1.1
4,264,182	+		PP_3736	0.44	-1.7
4,264,183	-		PP_3736	0.44	-0.9
4,264,183	-		PP_3736	0.44	-1.0
4,264,183	-		PP_3736	0.44	+1.3
4,264,382	+		PP_3736	0.63	-2.5
4,264,382	+		PP_3736	0.63	-2.3
4,264,383	-		PP_3736	0.63	-0.3
4,264,383	-		PP_3736	0.63	+0.7
4,264,383	-		PP_3736	0.63	-0.5
4,264,408	+		PP_3736	0.66	-2.9