Strain Fitness in Pseudomonas putida KT2440 around PP_3730

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,256,028	-				-1.2
4,256,161	+				-2.4
4,256,383	+		PP_3729	0.33	-0.7
4,256,383	+		PP_3729	0.33	-0.3
4,256,384	-		PP_3729	0.33	+0.3
4,256,384	-		PP_3729	0.33	-0.5
4,256,485	+		PP_3729	0.46	-0.4
4,256,486	-		PP_3729	0.46	-1.2
4,256,486	-		PP_3729	0.46	-0.4
4,256,497	+		PP_3729	0.48	+1.2
4,256,567	-		PP_3729	0.57	-2.0
4,256,615	+		PP_3729	0.63	-2.8
4,256,642	-		PP_3729	0.66	-2.7
4,256,932	-				-0.7
4,256,932	-				-4.0
4,257,325	-				+1.6
4,257,366	+		PP_3730	0.65	-3.8
4,257,533	+				+0.3
4,257,534	-		PP_3730	0.88	-2.2
4,257,558	+				-1.7
4,257,559	-				+0.2
4,257,559	-				-0.9
4,257,651	+				-1.4
4,257,652	-				-3.7
4,257,652	-				-2.2
4,257,652	-				-0.8
4,257,652	-				+0.8
4,257,672	+				+0.8
4,257,673	-				+0.2
4,257,673	-				+0.1
4,257,906	+		PP_3731	0.33	-2.4
4,257,929	-		PP_3731	0.37	-1.2
4,257,938	-		PP_3731	0.38	-1.4
4,258,141	+		PP_3731	0.69	+0.3
4,258,141	+		PP_3731	0.69	+1.7
4,258,141	+		PP_3731	0.69	-1.4
4,258,141	+		PP_3731	0.69	-0.1
4,258,141	+		PP_3731	0.69	+0.5
4,258,141	+		PP_3731	0.69	-0.2
4,258,141	+		PP_3731	0.69	-0.2
4,258,141	+		PP_3731	0.69	+3.3
4,258,141	+		PP_3731	0.69	+1.2
4,258,141	+		PP_3731	0.69	+0.3
4,258,142	-		PP_3731	0.70	-0.3
4,258,142	-		PP_3731	0.70	-2.1
4,258,142	-		PP_3731	0.70	+1.1
4,258,142	-		PP_3731	0.70	-1.2
4,258,142	-		PP_3731	0.70	-0.3
4,258,142	-		PP_3731	0.70	-2.9
4,258,142	-		PP_3731	0.70	-1.2
4,258,142	-		PP_3731	0.70	+0.6
4,258,174	+		PP_3731	0.75	-2.8
4,258,318	+				+1.5
4,258,375	+				+0.1
4,258,398	-				-2.5
4,258,404	+				-0.8
4,258,405	-				-1.9
4,258,405	-				+0.9
4,258,547	+		PP_3732	0.12	-2.9
4,258,547	+		PP_3732	0.12	+0.4
4,258,547	+		PP_3732	0.12	-2.6
4,258,548	-		PP_3732	0.13	-3.1
4,258,548	-		PP_3732	0.13	-1.2
4,258,548	-		PP_3732	0.13	-2.1
4,258,548	-		PP_3732	0.13	-0.3
4,258,548	-		PP_3732	0.13	-1.2