Experiment: P. putida PUT 7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3727 and PP_3728 are separated by 196 nucleotides PP_3728 and PP_3729 overlap by 4 nucleotides PP_3729 and PP_3730 overlap by 4 nucleotides
PP_3727: PP_3727 - Amino-acid permease RocE, at 4,252,272 to 4,253,678
_3727
PP_3728: PP_3728 - Sensor histidine kinase/response regulator, at 4,253,875 to 4,256,127
_3728
PP_3729: PP_3729 - Periplasmic amino acid-binding protein-related protein, at 4,256,124 to 4,256,906
_3729
PP_3730: PP_3730 - Transcriptional regulatory protein AruR, at 4,256,903 to 4,257,619
_3730
Position (kb)
4253
4254
4255
4256
4257 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4252.924 kb on + strand, within PP_3727 at 4252.924 kb on + strand, within PP_3727 at 4252.924 kb on + strand, within PP_3727 at 4252.924 kb on + strand, within PP_3727 at 4252.924 kb on + strand, within PP_3727 at 4252.925 kb on - strand, within PP_3727 at 4252.925 kb on - strand, within PP_3727 at 4252.925 kb on - strand, within PP_3727 at 4253.036 kb on - strand, within PP_3727 at 4253.036 kb on - strand, within PP_3727 at 4253.218 kb on + strand, within PP_3727 at 4253.358 kb on + strand, within PP_3727 at 4253.358 kb on + strand, within PP_3727 at 4253.383 kb on + strand, within PP_3727 at 4253.383 kb on + strand, within PP_3727 at 4253.422 kb on + strand, within PP_3727 at 4253.422 kb on + strand, within PP_3727 at 4253.422 kb on + strand, within PP_3727 at 4253.423 kb on - strand, within PP_3727 at 4253.500 kb on + strand, within PP_3727 at 4253.500 kb on + strand, within PP_3727 at 4253.501 kb on - strand, within PP_3727 at 4253.525 kb on - strand, within PP_3727 at 4253.525 kb on - strand, within PP_3727 at 4253.525 kb on - strand, within PP_3727 at 4253.565 kb on + strand at 4253.565 kb on + strand at 4253.565 kb on + strand at 4253.737 kb on - strand at 4253.749 kb on + strand at 4253.750 kb on - strand at 4253.764 kb on + strand at 4253.765 kb on - strand at 4253.765 kb on - strand at 4253.803 kb on + strand at 4253.804 kb on - strand at 4253.818 kb on + strand at 4253.818 kb on + strand at 4253.818 kb on + strand at 4253.818 kb on + strand at 4253.818 kb on + strand at 4253.819 kb on - strand at 4253.819 kb on - strand at 4253.831 kb on + strand at 4253.872 kb on - strand at 4253.917 kb on + strand at 4253.917 kb on + strand at 4253.918 kb on - strand at 4253.959 kb on + strand at 4253.959 kb on + strand at 4253.960 kb on - strand at 4254.242 kb on - strand, within PP_3728 at 4254.292 kb on + strand, within PP_3728 at 4254.303 kb on + strand, within PP_3728 at 4254.304 kb on - strand, within PP_3728 at 4254.393 kb on + strand, within PP_3728 at 4254.393 kb on + strand, within PP_3728 at 4254.394 kb on - strand, within PP_3728 at 4254.514 kb on + strand, within PP_3728 at 4254.708 kb on + strand, within PP_3728 at 4254.905 kb on - strand, within PP_3728 at 4254.980 kb on + strand, within PP_3728 at 4254.981 kb on - strand, within PP_3728 at 4254.981 kb on - strand, within PP_3728 at 4255.154 kb on + strand, within PP_3728 at 4255.155 kb on - strand, within PP_3728 at 4255.155 kb on - strand, within PP_3728 at 4255.199 kb on + strand, within PP_3728 at 4255.200 kb on - strand at 4255.272 kb on + strand, within PP_3728 at 4255.272 kb on + strand, within PP_3728 at 4255.421 kb on - strand, within PP_3728 at 4255.476 kb on + strand, within PP_3728 at 4255.623 kb on - strand, within PP_3728 at 4255.623 kb on - strand, within PP_3728 at 4255.623 kb on - strand, within PP_3728 at 4255.700 kb on + strand, within PP_3728 at 4255.700 kb on + strand, within PP_3728 at 4255.700 kb on + strand, within PP_3728 at 4255.700 kb on + strand, within PP_3728 at 4255.782 kb on - strand, within PP_3728 at 4255.782 kb on - strand, within PP_3728 at 4255.782 kb on - strand, within PP_3728 at 4255.782 kb on - strand, within PP_3728 at 4256.028 kb on - strand at 4256.161 kb on + strand at 4256.383 kb on + strand, within PP_3729 at 4256.383 kb on + strand, within PP_3729 at 4256.384 kb on - strand, within PP_3729 at 4256.384 kb on - strand, within PP_3729 at 4256.485 kb on + strand, within PP_3729 at 4256.486 kb on - strand, within PP_3729 at 4256.486 kb on - strand, within PP_3729 at 4256.497 kb on + strand, within PP_3729 at 4256.567 kb on - strand, within PP_3729 at 4256.615 kb on + strand, within PP_3729 at 4256.642 kb on - strand, within PP_3729 at 4256.932 kb on - strand at 4256.932 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1 remove 4,252,924 + PP_3727 0.46 -2.3 4,252,924 + PP_3727 0.46 -3.2 4,252,924 + PP_3727 0.46 -0.9 4,252,924 + PP_3727 0.46 -0.6 4,252,924 + PP_3727 0.46 +1.5 4,252,925 - PP_3727 0.46 -3.0 4,252,925 - PP_3727 0.46 -1.2 4,252,925 - PP_3727 0.46 -1.7 4,253,036 - PP_3727 0.54 -3.6 4,253,036 - PP_3727 0.54 -2.0 4,253,218 + PP_3727 0.67 -1.3 4,253,358 + PP_3727 0.77 -3.2 4,253,358 + PP_3727 0.77 -0.3 4,253,383 + PP_3727 0.79 +1.1 4,253,383 + PP_3727 0.79 -0.1 4,253,422 + PP_3727 0.82 -0.7 4,253,422 + PP_3727 0.82 -1.9 4,253,422 + PP_3727 0.82 -2.6 4,253,423 - PP_3727 0.82 -2.6 4,253,500 + PP_3727 0.87 -0.2 4,253,500 + PP_3727 0.87 -0.6 4,253,501 - PP_3727 0.87 -1.2 4,253,525 - PP_3727 0.89 -0.5 4,253,525 - PP_3727 0.89 -1.0 4,253,525 - PP_3727 0.89 -0.3 4,253,565 + -0.2 4,253,565 + +0.2 4,253,565 + -0.3 4,253,737 - +0.7 4,253,749 + -3.3 4,253,750 - +0.5 4,253,764 + -3.6 4,253,765 - -3.2 4,253,765 - -2.2 4,253,803 + -2.4 4,253,804 - +0.9 4,253,818 + -0.5 4,253,818 + +2.4 4,253,818 + -0.2 4,253,818 + +0.6 4,253,818 + -3.0 4,253,819 - +0.4 4,253,819 - -1.8 4,253,831 + -1.5 4,253,872 - -3.1 4,253,917 + -1.0 4,253,917 + -0.1 4,253,918 - -0.2 4,253,959 + -3.1 4,253,959 + -3.5 4,253,960 - -1.0 4,254,242 - PP_3728 0.16 +1.4 4,254,292 + PP_3728 0.19 -1.5 4,254,303 + PP_3728 0.19 -3.6 4,254,304 - PP_3728 0.19 +0.4 4,254,393 + PP_3728 0.23 -3.5 4,254,393 + PP_3728 0.23 -0.6 4,254,394 - PP_3728 0.23 -0.2 4,254,514 + PP_3728 0.28 +1.8 4,254,708 + PP_3728 0.37 -3.3 4,254,905 - PP_3728 0.46 +0.7 4,254,980 + PP_3728 0.49 +2.2 4,254,981 - PP_3728 0.49 +0.8 4,254,981 - PP_3728 0.49 -1.5 4,255,154 + PP_3728 0.57 -1.5 4,255,155 - PP_3728 0.57 +0.7 4,255,155 - PP_3728 0.57 +0.4 4,255,199 + PP_3728 0.59 -1.3 4,255,200 - +0.4 4,255,272 + PP_3728 0.62 +0.8 4,255,272 + PP_3728 0.62 -0.8 4,255,421 - PP_3728 0.69 -1.2 4,255,476 + PP_3728 0.71 -1.8 4,255,623 - PP_3728 0.78 -2.1 4,255,623 - PP_3728 0.78 -3.0 4,255,623 - PP_3728 0.78 -0.6 4,255,700 + PP_3728 0.81 -2.5 4,255,700 + PP_3728 0.81 -1.2 4,255,700 + PP_3728 0.81 -2.1 4,255,700 + PP_3728 0.81 -0.4 4,255,782 - PP_3728 0.85 -2.9 4,255,782 - PP_3728 0.85 -1.8 4,255,782 - PP_3728 0.85 +0.7 4,255,782 - PP_3728 0.85 -1.7 4,256,028 - -1.2 4,256,161 + -2.4 4,256,383 + PP_3729 0.33 -0.7 4,256,383 + PP_3729 0.33 -0.3 4,256,384 - PP_3729 0.33 +0.3 4,256,384 - PP_3729 0.33 -0.5 4,256,485 + PP_3729 0.46 -0.4 4,256,486 - PP_3729 0.46 -1.2 4,256,486 - PP_3729 0.46 -0.4 4,256,497 + PP_3729 0.48 +1.2 4,256,567 - PP_3729 0.57 -2.0 4,256,615 + PP_3729 0.63 -2.8 4,256,642 - PP_3729 0.66 -2.7 4,256,932 - -0.7 4,256,932 - -4.0
Or see this region's nucleotide sequence