Strain Fitness in Pseudomonas putida KT2440 around PP_3728

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,252,924	+		PP_3727	0.46	-2.3
4,252,924	+		PP_3727	0.46	-3.2
4,252,924	+		PP_3727	0.46	-0.9
4,252,924	+		PP_3727	0.46	-0.6
4,252,924	+		PP_3727	0.46	+1.5
4,252,925	-		PP_3727	0.46	-3.0
4,252,925	-		PP_3727	0.46	-1.2
4,252,925	-		PP_3727	0.46	-1.7
4,253,036	-		PP_3727	0.54	-3.6
4,253,036	-		PP_3727	0.54	-2.0
4,253,218	+		PP_3727	0.67	-1.3
4,253,358	+		PP_3727	0.77	-3.2
4,253,358	+		PP_3727	0.77	-0.3
4,253,383	+		PP_3727	0.79	+1.1
4,253,383	+		PP_3727	0.79	-0.1
4,253,422	+		PP_3727	0.82	-0.7
4,253,422	+		PP_3727	0.82	-1.9
4,253,422	+		PP_3727	0.82	-2.6
4,253,423	-		PP_3727	0.82	-2.6
4,253,500	+		PP_3727	0.87	-0.2
4,253,500	+		PP_3727	0.87	-0.6
4,253,501	-		PP_3727	0.87	-1.2
4,253,525	-		PP_3727	0.89	-0.5
4,253,525	-		PP_3727	0.89	-1.0
4,253,525	-		PP_3727	0.89	-0.3
4,253,565	+				-0.2
4,253,565	+				+0.2
4,253,565	+				-0.3
4,253,737	-				+0.7
4,253,749	+				-3.3
4,253,750	-				+0.5
4,253,764	+				-3.6
4,253,765	-				-3.2
4,253,765	-				-2.2
4,253,803	+				-2.4
4,253,804	-				+0.9
4,253,818	+				-0.5
4,253,818	+				+2.4
4,253,818	+				-0.2
4,253,818	+				+0.6
4,253,818	+				-3.0
4,253,819	-				+0.4
4,253,819	-				-1.8
4,253,831	+				-1.5
4,253,872	-				-3.1
4,253,917	+				-1.0
4,253,917	+				-0.1
4,253,918	-				-0.2
4,253,959	+				-3.1
4,253,959	+				-3.5
4,253,960	-				-1.0
4,254,242	-		PP_3728	0.16	+1.4
4,254,292	+		PP_3728	0.19	-1.5
4,254,303	+		PP_3728	0.19	-3.6
4,254,304	-		PP_3728	0.19	+0.4
4,254,393	+		PP_3728	0.23	-3.5
4,254,393	+		PP_3728	0.23	-0.6
4,254,394	-		PP_3728	0.23	-0.2
4,254,514	+		PP_3728	0.28	+1.8
4,254,708	+		PP_3728	0.37	-3.3
4,254,905	-		PP_3728	0.46	+0.7
4,254,980	+		PP_3728	0.49	+2.2
4,254,981	-		PP_3728	0.49	+0.8
4,254,981	-		PP_3728	0.49	-1.5
4,255,154	+		PP_3728	0.57	-1.5
4,255,155	-		PP_3728	0.57	+0.7
4,255,155	-		PP_3728	0.57	+0.4
4,255,199	+		PP_3728	0.59	-1.3
4,255,200	-				+0.4
4,255,272	+		PP_3728	0.62	+0.8
4,255,272	+		PP_3728	0.62	-0.8
4,255,421	-		PP_3728	0.69	-1.2
4,255,476	+		PP_3728	0.71	-1.8
4,255,623	-		PP_3728	0.78	-2.1
4,255,623	-		PP_3728	0.78	-3.0
4,255,623	-		PP_3728	0.78	-0.6
4,255,700	+		PP_3728	0.81	-2.5
4,255,700	+		PP_3728	0.81	-1.2
4,255,700	+		PP_3728	0.81	-2.1
4,255,700	+		PP_3728	0.81	-0.4
4,255,782	-		PP_3728	0.85	-2.9
4,255,782	-		PP_3728	0.85	-1.8
4,255,782	-		PP_3728	0.85	+0.7
4,255,782	-		PP_3728	0.85	-1.7
4,256,028	-				-1.2
4,256,161	+				-2.4
4,256,383	+		PP_3729	0.33	-0.7
4,256,383	+		PP_3729	0.33	-0.3
4,256,384	-		PP_3729	0.33	+0.3
4,256,384	-		PP_3729	0.33	-0.5
4,256,485	+		PP_3729	0.46	-0.4
4,256,486	-		PP_3729	0.46	-1.2
4,256,486	-		PP_3729	0.46	-0.4
4,256,497	+		PP_3729	0.48	+1.2
4,256,567	-		PP_3729	0.57	-2.0
4,256,615	+		PP_3729	0.63	-2.8
4,256,642	-		PP_3729	0.66	-2.7
4,256,932	-				-0.7
4,256,932	-				-4.0