Strain Fitness in Pseudomonas putida KT2440 around PP_3716

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,237,609	-		PP_3715	0.43	+0.5
4,237,645	+		PP_3715	0.46	-2.5
4,237,646	-		PP_3715	0.46	-1.6
4,237,646	-		PP_3715	0.46	-0.6
4,238,068	+		PP_3715	0.84	-1.7
4,238,075	-		PP_3715	0.84	+0.8
4,238,142	+				+1.3
4,238,223	+				+1.2
4,238,223	+				-0.6
4,238,223	+				-0.6
4,238,224	-				+0.4
4,238,224	-				-0.0
4,238,406	+				-2.0
4,238,574	+		PP_3716	0.22	-0.5
4,238,682	-		PP_3716	0.34	-1.5
4,238,688	+		PP_3716	0.35	+0.2
4,238,688	+		PP_3716	0.35	-0.9
4,238,689	-		PP_3716	0.35	-1.9
4,238,689	-		PP_3716	0.35	+2.4
4,238,689	-		PP_3716	0.35	+0.2
4,238,689	-		PP_3716	0.35	-2.4
4,238,979	+		PP_3716	0.68	-3.9
4,238,979	+		PP_3716	0.68	-0.9
4,238,980	-		PP_3716	0.68	-0.2
4,238,980	-		PP_3716	0.68	-3.6
4,238,980	-		PP_3716	0.68	+0.3
4,238,980	-		PP_3716	0.68	+1.4
4,238,980	-		PP_3716	0.68	-2.6
4,239,112	+		PP_3716	0.83	+0.0
4,239,141	+		PP_3716	0.87	-2.6
4,239,253	+				-2.7
4,239,254	-				-0.8
4,239,254	-				+0.4
4,239,281	+				-2.2
4,239,281	+				-1.2
4,239,281	+				+0.8
4,239,282	-				-0.2
4,239,282	-				-0.5
4,239,282	-				+1.0
4,239,282	-				-3.2
4,239,282	-				+0.8
4,239,282	-				-1.5
4,239,282	-				+0.7
4,239,282	-				+1.3
4,239,283	+				+0.3
4,239,283	+				+1.1
4,239,284	-				-1.0
4,239,302	-				-2.3
4,239,314	+				-0.6
4,239,314	+				-1.4
4,239,317	-				-1.2
4,239,317	-				+0.0
4,239,317	-				-0.0
4,239,328	+				-0.5
4,239,328	+				-0.7
4,239,329	-				+0.5
4,239,329	-				-0.3
4,239,329	-				-2.7
4,239,329	-				-3.0
4,239,481	+		PP_3717	0.10	-2.0
4,239,481	+		PP_3717	0.10	-0.8
4,239,481	+		PP_3717	0.10	+0.2
4,239,481	+		PP_3717	0.10	+1.7
4,239,482	-		PP_3717	0.10	-0.1
4,239,482	-		PP_3717	0.10	-1.9
4,239,521	+		PP_3717	0.15	-0.5
4,239,522	-		PP_3717	0.15	+0.1
4,239,522	-		PP_3717	0.15	+0.8
4,239,522	-		PP_3717	0.15	+0.9
4,239,820	+		PP_3717	0.48	-1.6
4,239,820	+		PP_3717	0.48	-0.5
4,239,820	+		PP_3717	0.48	+0.3
4,239,821	-				+0.4
4,239,821	-		PP_3717	0.48	-0.9
4,239,821	-		PP_3717	0.48	+1.0
4,239,821	-		PP_3717	0.48	+0.5
4,239,821	-		PP_3717	0.48	+0.3
4,239,823	+		PP_3717	0.48	-0.1
4,239,824	-		PP_3717	0.48	+0.4
4,239,824	-		PP_3717	0.48	-0.2
4,239,824	-		PP_3717	0.48	+0.9
4,239,854	-		PP_3717	0.52	-3.3
4,239,856	+		PP_3717	0.52	-0.6
4,239,857	-		PP_3717	0.52	+1.0
4,239,857	-		PP_3717	0.52	-1.4
4,239,857	-		PP_3717	0.52	-3.0
4,239,857	-		PP_3717	0.52	-0.2
4,239,865	+		PP_3717	0.53	-0.6
4,239,865	+		PP_3717	0.53	-0.2
4,239,865	+		PP_3717	0.53	-1.5
4,239,865	+		PP_3717	0.53	-1.0
4,239,865	+		PP_3717	0.53	+0.4
4,239,866	-		PP_3717	0.53	-1.2
4,239,866	-		PP_3717	0.53	-1.1
4,239,866	-		PP_3717	0.53	-1.0
4,239,866	-		PP_3717	0.53	-0.4
4,239,866	-		PP_3717	0.53	-0.3
4,239,868	+		PP_3717	0.53	+0.6
4,239,869	-		PP_3717	0.53	-1.4
4,239,869	-		PP_3717	0.53	+0.4
4,239,869	-		PP_3717	0.53	-1.9
4,239,869	-		PP_3717	0.53	-2.3
4,239,913	+		PP_3717	0.58	+0.1
4,239,913	+		PP_3717	0.58	-1.6
4,239,914	-		PP_3717	0.58	-0.2
4,239,967	+		PP_3717	0.64	-1.2
4,239,982	+		PP_3717	0.66	-2.0
4,239,982	+		PP_3717	0.66	+0.9
4,239,983	-		PP_3717	0.66	+0.4
4,239,983	-		PP_3717	0.66	-2.1
4,240,030	+		PP_3717	0.71	+1.4
4,240,030	+		PP_3717	0.71	-3.1
4,240,117	+		PP_3717	0.81	+0.6
4,240,117	+		PP_3717	0.81	-2.2
4,240,117	+		PP_3717	0.81	+1.4
4,240,117	+		PP_3717	0.81	-2.8
4,240,245	-				-2.0