Strain Fitness in Pseudomonas putida KT2440 around PP_3703

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,222,169	+		PP_3700	0.69	-1.6
4,222,169	+				+0.5
4,222,169	+		PP_3700	0.69	+0.7
4,222,170	-		PP_3700	0.69	+0.3
4,222,200	+		PP_3700	0.72	-2.8
4,222,228	+		PP_3700	0.75	+0.3
4,222,228	+		PP_3700	0.75	-0.5
4,222,228	+		PP_3700	0.75	-0.1
4,222,228	+		PP_3700	0.75	-2.4
4,222,228	+		PP_3700	0.75	+2.3
4,222,229	-		PP_3700	0.75	-0.1
4,222,229	-		PP_3700	0.75	+0.4
4,222,252	-		PP_3700	0.77	+1.5
4,222,282	+		PP_3700	0.79	+0.2
4,222,282	+		PP_3700	0.79	-0.2
4,222,282	+		PP_3700	0.79	-1.3
4,222,283	-		PP_3700	0.79	+0.0
4,222,283	-		PP_3700	0.79	+0.3
4,222,283	-		PP_3700	0.79	+1.7
4,222,283	-		PP_3700	0.79	+0.6
4,222,403	+				+0.7
4,222,449	+				-2.5
4,222,449	+				+2.3
4,222,449	+				+2.4
4,222,449	+				-1.4
4,222,450	-				-0.4
4,222,450	-				-0.5
4,222,450	-				-0.4
4,222,450	-				-1.2
4,222,451	+				+0.0
4,222,451	+				+2.1
4,222,452	-				+0.7
4,222,452	-				-0.5
4,222,510	+				+0.0
4,222,511	-				+1.4
4,222,511	-				-0.1
4,222,530	+				-1.8
4,222,637	+				+0.3
4,222,637	+				+0.9
4,222,637	+				+1.0
4,222,637	+				+0.7
4,222,638	-				+0.7
4,222,696	+		PP_3701	0.22	+1.0
4,222,696	+		PP_3701	0.22	-1.5
4,222,696	+		PP_3701	0.22	+0.9
4,222,697	-		PP_3701	0.23	-1.0
4,222,697	-		PP_3701	0.23	-2.0
4,222,697	-		PP_3701	0.23	-2.1
4,222,697	-		PP_3701	0.23	+0.6
4,222,697	-		PP_3701	0.23	+0.8
4,222,698	+		PP_3701	0.23	+0.7
4,222,698	+		PP_3701	0.23	+0.7
4,222,699	-		PP_3701	0.24	-0.1
4,222,699	-		PP_3701	0.24	-2.0
4,222,720	+				+2.5
4,222,720	+		PP_3701	0.34	+0.7
4,222,720	+		PP_3701	0.34	-0.3
4,222,862	-				+0.4
4,222,870	+				+0.8
4,222,870	+				+1.2
4,222,871	-				+0.6
4,222,969	+		PP_3702	0.60	-3.5
4,222,995	+				+3.1
4,222,995	+		PP_3702	0.75	-3.5
4,222,995	+		PP_3702	0.75	-0.5
4,222,995	+		PP_3702	0.75	+0.1
4,222,995	+		PP_3702	0.75	-1.7
4,222,996	-		PP_3702	0.76	+0.8
4,222,996	-		PP_3702	0.76	+1.5
4,222,996	-		PP_3702	0.76	+1.2
4,222,996	-		PP_3702	0.76	+0.8
4,223,080	-				-0.1
4,223,095	+				+0.5
4,223,108	+				+1.0
4,223,108	+				-0.3
4,223,108	+				+0.3
4,223,108	+				+0.2
4,223,109	-				-2.6
4,223,109	-				+0.5
4,223,109	-				-0.1
4,223,109	-				+1.2
4,223,140	-				+1.2
4,223,140	-				+0.4
4,223,140	-				-0.5
4,223,140	-				-3.5
4,223,140	-				+1.2
4,223,173	+				+0.5
4,223,174	-		PP_3703	0.10	+1.0
4,223,381	+		PP_3703	0.36	+1.3
4,223,382	-		PP_3703	0.36	+0.6
4,223,431	+		PP_3703	0.42	-0.4
4,223,432	-		PP_3703	0.43	+0.7
4,223,432	-		PP_3703	0.43	-0.8
4,223,432	-		PP_3703	0.43	-0.3
4,223,432	-		PP_3703	0.43	+0.6
4,223,441	+		PP_3703	0.44	+0.6
4,223,478	+		PP_3703	0.48	+2.4
4,223,479	-		PP_3703	0.48	+1.1
4,223,479	-		PP_3703	0.48	-2.3
4,223,535	+		PP_3703	0.55	-0.2
4,223,536	-		PP_3703	0.56	+1.0
4,223,536	-		PP_3703	0.56	+1.3
4,223,587	+		PP_3703	0.62	+0.0
4,223,596	+		PP_3703	0.63	+0.5
4,223,639	+		PP_3703	0.69	+2.1
4,223,640	-		PP_3703	0.69	+0.7
4,223,716	+		PP_3703	0.78	+0.4
4,223,717	-		PP_3703	0.78	-2.4
4,223,717	-		PP_3703	0.78	-0.7
4,223,717	-		PP_3703	0.78	+0.4
4,223,727	+		PP_3703	0.80	-0.8
4,223,728	-		PP_3703	0.80	+1.8
4,223,728	-		PP_3703	0.80	-2.6
4,223,728	-		PP_3703	0.80	+1.7
4,223,734	+		PP_3703	0.81	-0.4
4,223,735	-		PP_3703	0.81	-0.1
4,223,807	+		PP_3703	0.90	+0.8
4,223,852	-				-1.1
4,223,852	-				+0.6
4,223,880	+				+0.9
4,223,881	-				+0.9
4,223,881	-				-2.0
4,223,881	-				+2.2
4,223,949	+				+0.3
4,223,949	+				+2.5
4,223,949	+				+1.9
4,223,949	+				+0.2
4,223,949	+				-0.1
4,223,949	+				+0.1
4,223,949	+				+1.1
4,223,949	+				+1.3
4,223,949	+				+0.8
4,223,949	+				+0.0
4,224,051	+				+0.6
4,224,061	+				-0.9
4,224,078	+				+0.9
4,224,078	+				-3.5
4,224,097	+				+1.5
4,224,222	+				+0.0
4,224,222	+				+0.7
4,224,222	+				+2.0
4,224,232	+				+0.1
4,224,232	+				-0.8
4,224,232	+				-1.0
4,224,232	+				+0.3
4,224,232	+				+1.2
4,224,232	+				+1.2
4,224,262	+				-0.3
4,224,263	-				+4.3
4,224,264	+				-0.5
4,224,264	+				-2.7
4,224,264	+				+0.6
4,224,360	+				-0.1
4,224,385	-				+0.6
4,224,417	+				+2.0
4,224,442	-				-1.0
4,224,481	+				-0.2
4,224,482	-				-1.3
4,224,482	-				+2.4
4,224,525	+				+0.7
4,224,526	-				+0.6
4,224,526	-				-1.2
4,224,572	-				-1.3
4,224,584	-				-0.1
4,224,584	-				+0.9
4,224,584	-				+2.1
4,224,594	-				+1.2
4,224,607	+				+0.8
4,224,608	-				-1.8
4,224,608	-				+1.3
4,224,669	+				-1.8
4,224,711	-				+2.5