Strain Fitness in Pseudomonas putida KT2440 around PP_3690

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,198,772	-		PP_3689	0.60	+0.4
4,198,801	+		PP_3689	0.63	-0.7
4,198,801	+		PP_3689	0.63	+1.3
4,198,802	-		PP_3689	0.63	+0.7
4,198,805	+		PP_3689	0.63	-1.8
4,198,806	-		PP_3689	0.63	-0.5
4,198,823	-		PP_3689	0.65	-0.6
4,198,829	+		PP_3689	0.66	+0.2
4,198,829	+		PP_3689	0.66	+2.8
4,198,829	+		PP_3689	0.66	-2.1
4,198,829	+		PP_3689	0.66	+1.8
4,198,830	-		PP_3689	0.66	+1.4
4,198,830	-		PP_3689	0.66	+0.3
4,198,830	-		PP_3689	0.66	+1.9
4,198,842	+		PP_3689	0.67	+0.7
4,198,843	-		PP_3689	0.67	+0.3
4,198,881	+		PP_3689	0.71	-0.2
4,198,881	+		PP_3689	0.71	-0.9
4,198,882	-		PP_3689	0.71	+1.6
4,198,882	-				+1.5
4,198,893	+		PP_3689	0.72	-0.4
4,198,894	-		PP_3689	0.72	+0.6
4,198,944	+		PP_3689	0.77	-0.4
4,198,945	-		PP_3689	0.77	+0.1
4,198,971	+		PP_3689	0.80	+0.8
4,198,972	-		PP_3689	0.80	+1.3
4,198,984	-		PP_3689	0.81	+1.1
4,199,046	+		PP_3689	0.87	+0.8
4,199,123	-				-1.5
4,199,192	-				+0.2
4,199,329	+				+0.1
4,199,330	-				+0.6
4,199,412	+				-0.5
4,199,436	+				+1.5
4,199,511	-				-0.2
4,199,591	+				-1.8
4,199,638	-				-0.2
4,199,667	+				+0.6
4,199,668	-				+0.7
4,199,692	-				+1.3
4,199,740	+				+1.6
4,199,741	-				+1.8
4,199,754	-				+1.7
4,199,807	-				+0.7
4,199,824	-				-0.4
4,199,846	+				+1.3
4,199,847	-				+0.1
4,200,140	-		PP_3690	0.32	+2.1
4,200,165	+		PP_3690	0.34	+0.1
4,200,165	+		PP_3690	0.34	+0.7
4,200,165	+		PP_3690	0.34	+3.7
4,200,166	-		PP_3690	0.34	+0.7
4,200,166	-		PP_3690	0.34	+1.1
4,200,192	+		PP_3690	0.36	+0.9
4,200,279	-		PP_3690	0.43	+0.4
4,200,439	-		PP_3690	0.55	+1.5
4,200,614	+		PP_3690	0.68	+1.2
4,200,615	-		PP_3690	0.68	-2.6
4,200,615	-		PP_3690	0.68	+1.0
4,200,617	-		PP_3690	0.68	-0.1
4,200,617	-		PP_3690	0.68	-3.1
4,200,617	-		PP_3690	0.68	-0.1
4,200,617	-		PP_3690	0.68	-0.5
4,200,713	-		PP_3690	0.75	+1.5
4,200,716	+		PP_3690	0.76	-0.5
4,200,717	-		PP_3690	0.76	+1.5
4,200,726	-		PP_3690	0.76	+0.9
4,200,726	-		PP_3690	0.76	+0.6
4,200,801	+		PP_3690	0.82	-2.1
4,200,802	-		PP_3690	0.82	-3.2
4,200,802	-		PP_3690	0.82	+2.2
4,200,831	-		PP_3690	0.84	+2.7
4,200,833	+		PP_3690	0.85	-3.3
4,200,834	-		PP_3690	0.85	-0.4
4,200,834	-		PP_3690	0.85	+1.2
4,200,849	-		PP_3690	0.86	+0.1
4,200,861	+		PP_3690	0.87	-0.2
4,200,861	+		PP_3690	0.87	+0.7
4,200,861	+		PP_3690	0.87	+1.3
4,200,862	-		PP_3690	0.87	+1.4
4,200,926	+				-2.2
4,200,974	+				-0.6
4,201,048	+				-1.3
4,201,049	-				-0.5
4,201,049	-				+0.7
4,201,085	+				+1.1
4,201,150	+				+0.3
4,201,185	-				+1.1
4,201,241	-				+0.9
4,201,552	-				+0.5
4,201,552	-				+0.6
4,201,552	-				+0.5
4,201,552	-				+0.6
4,201,552	-				+0.6
4,201,552	-				-1.3
4,201,583	+				+0.7
4,201,583	+				-0.4
4,201,583	+				+0.9
4,201,583	+				+0.5
4,201,584	-				+1.5
4,201,584	-				+0.0
4,201,584	-				-0.2
4,201,584	-				-2.2
4,201,584	-				+0.1
4,201,584	-				+0.6
4,201,584	-				-0.9
4,201,585	+				-0.3
4,201,585	+				-0.6
4,201,585	+				+0.7
4,201,585	+				+0.7
4,201,585	+				+1.0
4,201,586	-				-3.9
4,201,586	-				+0.7
4,201,586	-				+1.1
4,201,586	-				-2.4
4,201,586	-				+1.4
4,201,586	-				+2.2
4,201,634	+				+2.6
4,201,652	-				-0.7
4,201,675	+				+0.4
4,201,675	+				+0.1
4,201,676	-				-2.0
4,201,676	-				-3.5
4,201,676	-				-1.6
4,201,724	-				-2.8
4,201,782	+				+0.9
4,201,782	+				-2.8
4,201,782	+				+0.0
4,201,783	-				-0.9
4,201,783	-				+1.8
4,201,803	+				-2.8
4,201,804	-				+0.1
4,201,804	-				-1.8
4,201,939	-		PP_3691	0.12	+1.1