Strain Fitness in Pseudomonas putida KT2440 around PP_3689

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,197,202	+				+2.2
4,197,203	-		PP_5620	0.10	+0.6
4,197,229	-		PP_5620	0.15	+0.5
4,197,250	-		PP_5620	0.19	+0.8
4,197,303	+		PP_5620	0.29	-0.8
4,197,304	-		PP_5620	0.29	-0.5
4,197,339	+		PP_5620	0.36	+1.3
4,197,340	-		PP_5620	0.36	+0.6
4,197,340	-		PP_5620	0.36	+1.0
4,197,354	+		PP_5620	0.38	-0.8
4,197,354	+		PP_5620	0.38	+2.1
4,197,355	-		PP_5620	0.39	+1.8
4,197,355	-		PP_5620	0.39	+1.4
4,197,388	+		PP_5620	0.45	+2.0
4,197,424	-		PP_5620	0.51	+1.9
4,197,449	-		PP_5620	0.56	+1.2
4,197,466	-		PP_5620	0.59	-0.4
4,197,527	-		PP_5620	0.71	-0.2
4,197,527	-		PP_5620	0.71	+0.6
4,197,529	+		PP_5620	0.71	+1.1
4,197,574	+		PP_5620	0.80	+1.5
4,197,575	-		PP_5620	0.80	+1.1
4,197,657	+				-0.3
4,197,748	-				-0.4
4,197,806	+				+1.7
4,197,820	+				+2.6
4,197,820	+				-0.5
4,197,872	+				+1.1
4,197,872	+				+1.8
4,197,936	-				+0.3
4,198,015	+				-0.2
4,198,015	+				+1.6
4,198,015	+				-2.4
4,198,016	-				+2.4
4,198,038	+				+0.5
4,198,038	+				+0.2
4,198,038	+				-1.8
4,198,039	-				+2.5
4,198,039	-				+1.0
4,198,039	-				+0.9
4,198,039	-				-0.5
4,198,121	+				+0.7
4,198,121	+				+2.0
4,198,122	-				+1.7
4,198,122	-				+1.1
4,198,122	-				-0.2
4,198,122	-				-0.6
4,198,122	-				+1.4
4,198,132	+				+0.1
4,198,376	+		PP_3689	0.21	+0.5
4,198,376	+		PP_3689	0.21	-2.6
4,198,376	+		PP_3689	0.21	-0.1
4,198,377	-		PP_3689	0.21	+1.8
4,198,377	-		PP_3689	0.21	+0.6
4,198,419	-		PP_3689	0.25	+0.5
4,198,419	-		PP_3689	0.25	-0.3
4,198,482	-		PP_3689	0.31	+0.9
4,198,611	+		PP_3689	0.44	+0.7
4,198,611	+		PP_3689	0.44	+0.9
4,198,612	-		PP_3689	0.44	+1.3
4,198,612	-		PP_3689	0.44	+1.6
4,198,772	-		PP_3689	0.60	+0.4
4,198,801	+		PP_3689	0.63	-0.7
4,198,801	+		PP_3689	0.63	+1.3
4,198,802	-		PP_3689	0.63	+0.7
4,198,805	+		PP_3689	0.63	-1.8
4,198,806	-		PP_3689	0.63	-0.5
4,198,823	-		PP_3689	0.65	-0.6
4,198,829	+		PP_3689	0.66	+0.2
4,198,829	+		PP_3689	0.66	+2.8
4,198,829	+		PP_3689	0.66	-2.1
4,198,829	+		PP_3689	0.66	+1.8
4,198,830	-		PP_3689	0.66	+1.4
4,198,830	-		PP_3689	0.66	+0.3
4,198,830	-		PP_3689	0.66	+1.9
4,198,842	+		PP_3689	0.67	+0.7
4,198,843	-		PP_3689	0.67	+0.3
4,198,881	+		PP_3689	0.71	-0.2
4,198,881	+		PP_3689	0.71	-0.9
4,198,882	-		PP_3689	0.71	+1.6
4,198,882	-				+1.5
4,198,893	+		PP_3689	0.72	-0.4
4,198,894	-		PP_3689	0.72	+0.6
4,198,944	+		PP_3689	0.77	-0.4
4,198,945	-		PP_3689	0.77	+0.1
4,198,971	+		PP_3689	0.80	+0.8
4,198,972	-		PP_3689	0.80	+1.3
4,198,984	-		PP_3689	0.81	+1.1
4,199,046	+		PP_3689	0.87	+0.8
4,199,123	-				-1.5
4,199,192	-				+0.2
4,199,329	+				+0.1
4,199,330	-				+0.6
4,199,412	+				-0.5
4,199,436	+				+1.5
4,199,511	-				-0.2
4,199,591	+				-1.8
4,199,638	-				-0.2
4,199,667	+				+0.6
4,199,668	-				+0.7
4,199,692	-				+1.3
4,199,740	+				+1.6
4,199,741	-				+1.8
4,199,754	-				+1.7
4,199,807	-				+0.7
4,199,824	-				-0.4
4,199,846	+				+1.3
4,199,847	-				+0.1
4,200,140	-		PP_3690	0.32	+2.1
4,200,165	+		PP_3690	0.34	+0.1
4,200,165	+		PP_3690	0.34	+0.7
4,200,165	+		PP_3690	0.34	+3.7
4,200,166	-		PP_3690	0.34	+0.7
4,200,166	-		PP_3690	0.34	+1.1