Strain Fitness in Pseudomonas putida KT2440 around PP_3677

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,176,524	+		PP_3676	0.57	-0.1
4,176,525	-		PP_3676	0.57	+0.2
4,176,679	-		PP_3676	0.64	+1.0
4,176,684	-		PP_3676	0.65	-1.3
4,176,825	+		PP_3676	0.71	+0.6
4,176,826	-		PP_3676	0.71	-3.1
4,176,969	+		PP_3676	0.78	+1.1
4,177,054	-		PP_3676	0.82	+1.5
4,177,160	-		PP_3676	0.87	-0.9
4,177,179	-		PP_3676	0.88	-1.8
4,177,477	-				-1.8
4,177,598	-				+1.3
4,177,770	-		PP_3677	0.16	+0.1
4,177,874	-		PP_3677	0.20	-0.8
4,178,107	+		PP_3677	0.31	-1.7
4,178,108	-		PP_3677	0.31	+1.2
4,178,151	-		PP_3677	0.33	+3.1
4,178,198	+		PP_3677	0.35	+1.5
4,178,252	+		PP_3677	0.38	-2.1
4,178,253	-		PP_3677	0.38	-1.5
4,178,306	+		PP_3677	0.40	+0.8
4,178,309	-		PP_3677	0.40	+1.3
4,178,309	-		PP_3677	0.40	-0.5
4,178,309	-		PP_3677	0.40	+1.1
4,178,376	-		PP_3677	0.43	+0.8
4,178,507	+		PP_3677	0.49	-0.4
4,178,507	+		PP_3677	0.49	+0.8
4,178,529	+		PP_3677	0.50	+0.0
4,178,530	-		PP_3677	0.50	-3.0
4,178,530	-		PP_3677	0.50	-0.3
4,178,740	-		PP_3677	0.60	+0.3
4,178,844	+		PP_3677	0.65	+1.2
4,179,042	-		PP_3677	0.74	+1.9
4,179,236	-		PP_3677	0.83	+1.8
4,179,279	+		PP_3677	0.85	+0.8
4,179,279	+		PP_3677	0.85	+1.7
4,179,318	+		PP_3677	0.86	-3.0
4,179,478	+				+0.5
4,179,745	-		PP_5610	0.27	-0.8
4,179,810	+		PP_5610	0.39	+1.7
4,180,109	+				+1.5
4,180,516	-		PP_3678	0.26	-0.3