Strain Fitness in Pseudomonas putida KT2440 around PP_3666

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,163,802	+		PP_3665	0.16	-0.1
4,163,803	-		PP_3665	0.16	+0.9
4,163,803	-		PP_3665	0.16	+1.6
4,163,874	+		PP_3665	0.23	+0.1
4,163,874	+				+2.5
4,163,875	-		PP_3665	0.23	+1.0
4,163,945	+		PP_3665	0.30	-1.6
4,164,009	-		PP_3665	0.36	-0.0
4,164,020	+		PP_3665	0.37	+1.6
4,164,024	+		PP_3665	0.38	-0.6
4,164,024	+		PP_3665	0.38	-0.4
4,164,025	-		PP_3665	0.38	-1.0
4,164,156	+		PP_3665	0.51	+1.1
4,164,157	-		PP_3665	0.51	+0.5
4,164,450	+		PP_3665	0.80	+1.2
4,164,451	-		PP_3665	0.80	+0.8
4,164,451	-		PP_3665	0.80	-0.3
4,164,451	-		PP_3665	0.80	-0.1
4,164,474	+		PP_3665	0.82	-0.5
4,164,477	+		PP_3665	0.83	-2.3
4,164,477	+		PP_3665	0.83	-0.1
4,164,478	-		PP_3665	0.83	+0.9
4,164,478	-		PP_3665	0.83	+0.6
4,164,512	-		PP_3665	0.86	+0.4
4,164,512	-		PP_3665	0.86	+1.5
4,164,544	+		PP_3665	0.89	-0.6
4,164,544	+		PP_3665	0.89	-1.5
4,164,591	+				-2.2
4,164,591	+				-0.8
4,164,591	+				-0.5
4,164,591	+				-0.3
4,164,591	+				-0.8
4,164,591	+				+1.5
4,164,592	-				-0.8
4,164,593	+				+0.3
4,164,594	-				+0.5
4,164,594	-				-1.3
4,164,701	+				-0.0
4,164,701	+				-1.7
4,164,735	+				-0.0
4,164,736	-				+1.1
4,164,768	+				-0.4
4,164,846	+				-0.7
4,164,846	-				-1.2
4,164,847	-				+0.5
4,165,192	+		PP_3666	0.32	-0.1
4,165,192	+		PP_3666	0.32	+0.3
4,165,194	+		PP_3666	0.32	-1.1
4,165,194	+		PP_3666	0.32	-1.6
4,165,194	+		PP_3666	0.32	-1.8
4,165,194	+		PP_3666	0.32	-1.6
4,165,194	+		PP_3666	0.32	-0.7
4,165,195	-		PP_3666	0.32	-0.1
4,165,195	-		PP_3666	0.32	-1.9
4,165,195	-		PP_3666	0.32	-0.8
4,165,195	-		PP_3666	0.32	-2.7
4,165,195	-		PP_3666	0.32	+1.0
4,165,195	-		PP_3666	0.32	-2.0
4,165,195	-		PP_3666	0.32	-0.1
4,165,263	+		PP_3666	0.37	+1.5
4,165,264	-		PP_3666	0.37	-0.4
4,165,264	-		PP_3666	0.37	+1.2
4,165,275	+		PP_3666	0.38	+0.2
4,165,275	+		PP_3666	0.38	-0.5
4,165,276	-		PP_3666	0.38	-2.4
4,165,276	-		PP_3666	0.38	+0.7
4,165,290	+		PP_3666	0.39	-0.3
4,165,291	-		PP_3666	0.39	-1.4
4,165,291	-		PP_3666	0.39	+0.5
4,165,454	-		PP_3666	0.51	+0.1
4,165,455	+		PP_3666	0.52	-0.4
4,165,455	+		PP_3666	0.52	-2.4
4,165,455	+		PP_3666	0.52	-0.3
4,165,455	+		PP_3666	0.52	+0.4
4,165,455	+		PP_3666	0.52	-1.1
4,165,455	+		PP_3666	0.52	-1.9
4,165,456	-		PP_3666	0.52	-0.4
4,165,611	+		PP_3666	0.63	-0.1
4,165,611	+		PP_3666	0.63	+0.6
4,165,611	+		PP_3666	0.63	-0.4
4,165,612	-		PP_3666	0.63	+0.3
4,165,612	-		PP_3666	0.63	+0.3
4,165,695	-		PP_3666	0.70	-3.5
4,165,746	+		PP_3666	0.73	+1.2
4,165,965	+		PP_3666	0.90	-2.0
4,165,965	+		PP_3666	0.90	-0.5
4,165,980	+				-0.5
4,165,980	+				+0.7
4,165,981	-				-3.1
4,166,084	+				+1.0
4,166,084	+				+1.8
4,166,084	+				-0.2
4,166,085	-				-0.1
4,166,085	-				-2.4
4,166,151	-				-1.0
4,166,151	-				+1.1
4,166,151	-				+0.8
4,166,182	-				+3.7
4,166,182	-				-0.8
4,166,266	-				-0.4
4,166,437	+		PP_3667	0.14	-2.6
4,166,437	+		PP_3667	0.14	+1.1
4,166,437	+		PP_3667	0.14	-0.9
4,166,438	-		PP_3667	0.14	+1.5
4,166,438	-		PP_3667	0.14	+0.2
4,166,438	-		PP_3667	0.14	-1.2
4,166,478	+		PP_3667	0.18	+0.8
4,166,479	-		PP_3667	0.18	-2.2
4,166,481	+		PP_3667	0.18	+0.8
4,166,481	+		PP_3667	0.18	-0.8
4,166,481	+		PP_3667	0.18	-1.3
4,166,703	+		PP_3667	0.36	+1.1
4,166,704	-				+3.8
4,166,704	-		PP_3667	0.36	-1.4
4,166,704	-		PP_3667	0.36	+1.6
4,166,704	-		PP_3667	0.36	+0.6
4,166,901	+		PP_3667	0.53	+0.9
4,166,977	+		PP_3667	0.59	-2.1
4,166,978	-		PP_3667	0.59	-2.1
4,166,978	-		PP_3667	0.59	+0.4
4,167,014	-		PP_3667	0.62	-0.6
4,167,014	-		PP_3667	0.62	-0.9
4,167,057	+		PP_3667	0.65	-2.8