Strain Fitness in Pseudomonas putida KT2440

Strain Fitness in Pseudomonas putida KT2440 around PP_3658

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	P. putida PUT 7 MOI 1
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4,153,165	+			+0.9
4,153,217	+			+2.1
4,153,218	-			+0.9
4,153,294	+			-0.1
4,153,295	-			+0.4
4,153,306	-			-2.0
4,153,306	-			-0.1
4,153,306	-			+0.2
4,153,317	+			+1.5
4,153,432	-			+0.0
4,153,466	+	PP_3657	0.12	-3.5
4,153,466	+	PP_3657	0.12	-0.4
4,153,508	-	PP_3657	0.18	+0.5
4,153,538	+	PP_3657	0.23	-1.6
4,153,539	-	PP_3657	0.23	-1.1
4,153,542	+	PP_3657	0.23	+1.6
4,153,620	-	PP_3657	0.35	-1.4
4,153,620	-	PP_3657	0.35	-0.3
4,153,673	-	PP_3657	0.43	-1.1
4,153,673	-	PP_3657	0.43	+0.1
4,153,673	-	PP_3657	0.43	-2.2
4,153,755	+	PP_3657	0.55	-1.3
4,153,755	+	PP_3657	0.55	-0.9
4,153,755	+	PP_3657	0.55	+1.0
4,153,755	+	PP_3657	0.55	+1.1
4,153,756	-	PP_3657	0.55	+0.9
4,153,756	-	PP_3657	0.55	+1.7
4,153,756	-	PP_3657	0.55	-0.7
4,153,757	+	PP_3657	0.55	+0.2
4,153,757	+	PP_3657	0.55	+0.9
4,153,757	+	PP_3657	0.55	-0.4
4,153,758	-	PP_3657	0.55	+1.2
4,153,758	-	PP_3657	0.55	-1.1
4,153,758	-	PP_3657	0.55	-0.1
4,153,771	+	PP_3657	0.57	-2.1
4,153,771	+	PP_3657	0.57	-2.2
4,153,772	-	PP_3657	0.57	-0.0
4,153,772	-	PP_3657	0.57	-1.8
4,153,794	-	PP_3657	0.61	-2.9
4,153,817	+	PP_3657	0.64	-0.5
4,153,817	+	PP_3657	0.64	-1.5
4,153,820	+	PP_3657	0.65	+0.7
4,153,820	+	PP_3657	0.65	+0.3
4,153,821	-	PP_3657	0.65	-3.6
4,153,821	-	PP_3657	0.65	+1.0
4,153,902	+	PP_3657	0.77	+1.2
4,153,903	-	PP_3657	0.77	+1.5
4,153,956	+	PP_3657	0.85	+0.5
4,154,080	+			-1.3
4,154,106	+			+0.3
4,154,112	+			-0.4
4,154,112	+			-4.0
4,154,112	+			+1.2
4,154,112	+			+1.5
4,154,112	+			+0.2
4,154,112	+			+1.1
4,154,113	-			-0.7
4,154,113	-			-0.7
4,154,113	-			+0.9
4,154,113	-			+0.8
4,154,113	-			+0.4
4,154,113	-			+0.1
4,154,113	-			-0.8
4,154,113	-			-0.1
4,154,136	+			-0.5
4,154,137	-			-2.0
4,154,181	-			-0.3
4,154,181	-			+0.7
4,154,397	+	PP_3658	0.19	+1.0
4,154,397	+	PP_3658	0.19	+1.0
4,154,398	-	PP_3658	0.19	+0.1
4,154,403	+	PP_3658	0.19	+0.3
4,154,404	-	PP_3658	0.19	-2.1
4,154,404	-	PP_3658	0.19	-1.7
4,154,480	-	PP_3658	0.25	-0.4
4,154,480	-	PP_3658	0.25	-2.2
4,154,480	-	PP_3658	0.25	+0.7
4,154,481	+	PP_3658	0.25	-0.3
4,154,481	+	PP_3658	0.25	+1.5
4,154,482	-	PP_3658	0.25	+2.2
4,154,482	-	PP_3658	0.25	+0.8
4,154,513	+	PP_3658	0.27	-1.4
4,154,517	+	PP_3658	0.28	+0.8
4,154,517	+	PP_3658	0.28	+1.0
4,154,517	+	PP_3658	0.28	+0.7
4,154,517	+	PP_3658	0.28	+0.8
4,154,517	+	PP_3658	0.28	-1.2
4,154,517	+	PP_3658	0.28	+1.2
4,154,517	+	PP_3658	0.28	+0.5
4,154,517	+	PP_3658	0.28	+0.6
4,154,517	+	PP_3658	0.28	-0.7
4,154,518	-	PP_3658	0.28	-0.7
4,154,518	-	PP_3658	0.28	+0.8
4,154,518	-	PP_3658	0.28	-2.0
4,154,518	-	PP_3658	0.28	+0.7
4,154,518	-	PP_3658	0.28	-2.5
4,154,518	-	PP_3658	0.28	+0.5
4,154,551	+	PP_3658	0.30	+0.4
4,154,552	-	PP_3658	0.30	+0.3
4,154,682	+	PP_3658	0.40	+1.5
4,154,682	+	PP_3658	0.40	+0.9
4,154,733	+			-0.1
4,154,785	+	PP_3658	0.48	+1.5
4,154,785	+	PP_3658	0.48	+0.9
4,154,785	+	PP_3658	0.48	+0.5
4,154,786	-	PP_3658	0.48	-0.0
4,154,786	-	PP_3658	0.48	+0.7
4,154,890	+	PP_3658	0.55	-0.3
4,154,890	+	PP_3658	0.55	+2.1
4,154,890	+	PP_3658	0.55	-3.4
4,154,958	+	PP_3658	0.60	+1.4
4,154,967	+	PP_3658	0.61	-1.3
4,154,967	+	PP_3658	0.61	-0.8
4,154,968	-	PP_3658	0.61	+1.2
4,154,968	-	PP_3658	0.61	+0.1
4,154,968	-	PP_3658	0.61	+0.9
4,154,968	-	PP_3658	0.61	+1.4
4,154,968	-	PP_3658	0.61	-2.8
4,154,968	-	PP_3658	0.61	+0.4
4,154,979	+	PP_3658	0.62	-0.3
4,154,980	-	PP_3658	0.62	-0.7
4,155,103	+	PP_3658	0.71	-2.5
4,155,103	+	PP_3658	0.71	-3.3
4,155,103	+	PP_3658	0.71	+0.5
4,155,154	+	PP_3658	0.75	+0.9
4,155,155	-	PP_3658	0.75	+0.5
4,155,155	-	PP_3658	0.75	-1.3
4,155,216	-	PP_3658	0.79	+1.3
4,155,314	+	PP_3658	0.87	-1.3
4,155,314	+	PP_3658	0.87	+0.9
4,155,344	-	PP_3658	0.89	+0.9
4,155,391	-			-3.0
4,155,401	-			-1.0
4,155,425	+			-1.2
4,155,430	+			-0.5
4,155,431	-			-1.4
4,155,431	-			+0.8
4,155,474	+			+0.4
4,155,475	-			+0.4
4,155,475	-			+0.2
4,155,475	-			+0.3
4,155,479	-			-3.4
4,155,493	+			+1.2
4,155,494	-			-0.5
4,155,513	+			+0.7
4,155,514	-			-0.5
4,155,514	-			+2.3
4,155,538	+			+1.6
4,155,538	+			-0.6
4,155,538	+			-1.5
4,155,538	+			-2.7
4,155,538	+			-1.3
4,155,542	+			-0.9
4,155,542	+			+0.3
4,155,542	+			+1.1
4,155,542	+			-2.5
4,155,542	+			-2.8
4,155,542	+			+0.4
4,155,542	+			-1.2
4,155,543	-			-1.0
4,155,545	-			+0.4
4,155,545	-			-1.3
4,155,578	+			+1.0
4,155,578	+			+0.9
4,155,578	+			+0.3
4,155,578	+			-2.8
4,155,578	+			-1.7
4,155,579	-			-2.9
4,155,579	-			+0.5
4,155,624	+			+1.4
4,155,625	-			-3.8
4,155,654	+			-2.2
4,155,654	+			+1.3
4,155,655	-			-1.8
4,155,655	-			+0.8
4,155,766	+			-1.1
4,155,766	+			+0.5
4,155,766	+			+0.5
4,155,767	-			-1.6
4,155,767	-			-3.0
4,155,783	-			-0.8
4,155,799	+			-1.3
4,155,799	+			-1.5
4,155,799	+			+0.4
4,155,897	-	PP_3659	0.13	-1.4
4,155,897	-	PP_3659	0.13	+1.7
4,155,923	-	PP_3659	0.15	+0.2
4,155,936	+	PP_3659	0.17	-0.1
4,155,936	+	PP_3659	0.17	+0.2
4,155,937	-	PP_3659	0.17	-0.1
4,155,941	+	PP_3659	0.17	-0.4
4,155,942	-	PP_3659	0.17	-0.6
4,155,942	-	PP_3659	0.17	-0.1
4,155,959	-	PP_3659	0.19	+0.1
4,155,976	+	PP_3659	0.21	-1.1
4,155,990	+	PP_3659	0.22	-0.5
4,156,066	-	PP_3659	0.29	-0.0
4,156,082	+	PP_3659	0.31	-0.3
4,156,082	+	PP_3659	0.31	+0.3
4,156,082	+	PP_3659	0.31	-0.8
4,156,082	+	PP_3659	0.31	+0.3
4,156,083	-	PP_3659	0.31	-0.6
4,156,092	-	PP_3659	0.32	-0.7
4,156,124	+	PP_3659	0.35	-1.1
4,156,180	+	PP_3659	0.40	-1.6
4,156,180	+	PP_3659	0.40	+1.8
4,156,181	-	PP_3659	0.41	-1.0
4,156,307	+	PP_3659	0.53	+1.3
4,156,307	+	PP_3659	0.53	-2.6
4,156,409	+	PP_3659	0.63	+2.7
4,156,447	+	PP_3659	0.66	+2.6
4,156,447	+	PP_3659	0.66	-0.6

Or see this region's nucleotide sequence