Strain Fitness in Pseudomonas putida KT2440 around PP_3634

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,129,660	+		PP_3633	0.29	-3.3
4,129,660	+		PP_3633	0.29	-1.1
4,129,660	+		PP_3633	0.29	+1.5
4,129,660	+		PP_3633	0.29	-0.1
4,129,660	+		PP_3633	0.29	+0.0
4,129,661	-		PP_3633	0.29	-1.5
4,129,661	-		PP_3633	0.29	-0.8
4,129,896	-		PP_3633	0.54	-1.5
4,129,903	+		PP_3633	0.55	-1.1
4,129,903	+		PP_3633	0.55	-1.8
4,129,904	-		PP_3633	0.55	-3.5
4,130,092	+		PP_3633	0.75	-0.7
4,130,092	+		PP_3633	0.75	+0.6
4,130,093	-		PP_3633	0.75	+0.4
4,130,200	+		PP_3633	0.87	-0.3
4,130,200	+		PP_3633	0.87	-0.2
4,130,225	+		PP_3633	0.89	-2.8
4,130,226	-		PP_3633	0.89	+0.3
4,130,226	-		PP_3633	0.89	+0.5
4,130,348	+				+0.9
4,130,349	-				-1.2
4,130,349	-				+1.7
4,130,377	+				+0.5
4,130,378	-				+0.7
4,130,378	-				+1.1
4,130,534	+		PP_3634	0.19	-0.6
4,130,534	+		PP_3634	0.19	-1.3
4,130,567	+		PP_3634	0.24	+0.3
4,130,568	-		PP_3634	0.24	-1.7
4,130,882	-		PP_3634	0.70	+0.7
4,130,966	+		PP_3634	0.82	-1.1
4,130,967	-		PP_3634	0.82	+0.3
4,130,967	-		PP_3634	0.82	-1.4
4,130,967	-		PP_3634	0.82	-2.1
4,130,967	-		PP_3634	0.82	-3.8
4,131,129	+				-1.7
4,131,129	+				+0.1
4,131,129	+				-1.0
4,131,130	-				+0.6
4,131,155	+				+0.3
4,131,155	+				-0.1
4,131,156	-				-1.1
4,131,156	-				-1.1
4,131,156	-				+1.5
4,131,156	-				-1.5
4,131,388	+		PP_3635	0.25	-1.3
4,131,388	+		PP_3635	0.25	-1.1
4,131,576	+		PP_3635	0.50	-1.8
4,131,576	+		PP_3635	0.50	+0.0
4,131,638	+		PP_3635	0.58	-0.8
4,131,639	-		PP_3635	0.58	-2.4
4,131,775	+		PP_3635	0.76	+0.1
4,131,775	+		PP_3635	0.76	+0.6
4,131,775	+		PP_3635	0.76	-0.1
4,131,776	-		PP_3635	0.76	-0.8
4,131,776	-		PP_3635	0.76	+2.2
4,131,783	+		PP_3635	0.77	+0.6
4,131,879	-		PP_3635	0.90	-1.8
4,131,879	-		PP_3635	0.90	+0.9
4,131,879	-		PP_3635	0.90	+0.2
4,131,879	-		PP_3635	0.90	-0.0
4,131,894	-				-0.4
4,131,894	-				-1.9
4,131,894	-				+0.6
4,131,894	-				+1.5
4,131,938	+				+1.0
4,131,938	+				+1.1
4,131,939	-				-2.5
4,132,018	+				-3.2
4,132,018	+				-2.4
4,132,018	+				-0.3
4,132,019	-				-2.9
4,132,019	-				-0.8
4,132,073	+				+0.3
4,132,073	+				-0.4
4,132,074	-				-0.1