Strain Fitness in Pseudomonas putida KT2440 around PP_3630

Experiment: P. putida PUT 7 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3628 and PP_3629 are separated by 80 nucleotidesPP_3629 and PP_3630 are separated by 185 nucleotidesPP_3630 and PP_3631 are separated by 271 nucleotidesPP_3631 and PP_3632 are separated by 66 nucleotides PP_3628: PP_3628 - Choline/carnitine/betaine transporter family protein, at 4,123,526 to 4,125,271 _3628 PP_3629: PP_3629 - conserved protein of unknown function, at 4,125,352 to 4,125,831 _3629 PP_3630: PP_3630 - tyrosine-specific outer membrane porin D, at 4,126,017 to 4,127,360 _3630 PP_3631: PP_3631 - putative signal transduction protein, at 4,127,632 to 4,128,282 _3631 PP_3632: PP_3632 - Transcriptional regulator, LysR family, at 4,128,349 to 4,129,227 _3632 Position (kb) 4126 4127 4128Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4125.084 kb on + strand, within PP_3628at 4125.085 kb on - strand, within PP_3628at 4125.085 kb on - strand, within PP_3628at 4125.085 kb on - strand, within PP_3628at 4125.173 kb on + strandat 4125.173 kb on + strandat 4125.173 kb on + strandat 4125.173 kb on + strandat 4125.174 kb on - strandat 4125.174 kb on - strandat 4125.204 kb on - strandat 4125.204 kb on - strandat 4125.204 kb on - strandat 4125.204 kb on - strandat 4125.204 kb on - strandat 4125.300 kb on + strandat 4125.300 kb on + strandat 4125.768 kb on - strand, within PP_3629at 4125.800 kb on + strandat 4125.800 kb on + strandat 4125.801 kb on - strandat 4125.868 kb on - strandat 4125.875 kb on + strandat 4125.875 kb on + strandat 4125.927 kb on + strandat 4125.927 kb on + strandat 4125.983 kb on - strandat 4126.147 kb on + strandat 4126.147 kb on + strandat 4126.147 kb on + strandat 4126.147 kb on + strandat 4126.147 kb on + strandat 4126.147 kb on + strandat 4126.148 kb on - strandat 4126.148 kb on - strandat 4126.219 kb on + strand, within PP_3630at 4126.219 kb on + strand, within PP_3630at 4126.219 kb on + strand, within PP_3630at 4126.219 kb on + strand, within PP_3630at 4126.220 kb on - strand, within PP_3630at 4126.220 kb on - strand, within PP_3630at 4126.240 kb on + strand, within PP_3630at 4126.297 kb on + strand, within PP_3630at 4126.319 kb on - strand, within PP_3630at 4126.364 kb on - strand, within PP_3630at 4126.364 kb on - strand, within PP_3630at 4126.364 kb on - strand, within PP_3630at 4126.364 kb on - strand, within PP_3630at 4126.546 kb on + strand, within PP_3630at 4126.546 kb on + strand, within PP_3630at 4126.546 kb on + strand, within PP_3630at 4126.547 kb on - strand, within PP_3630at 4126.549 kb on + strand, within PP_3630at 4126.549 kb on + strand, within PP_3630at 4126.549 kb on + strand, within PP_3630at 4126.550 kb on - strand, within PP_3630at 4126.612 kb on + strand, within PP_3630at 4126.613 kb on - strand, within PP_3630at 4126.615 kb on + strand, within PP_3630at 4126.615 kb on + strand, within PP_3630at 4126.616 kb on - strand, within PP_3630at 4126.644 kb on - strand, within PP_3630at 4126.696 kb on + strand, within PP_3630at 4126.697 kb on - strand, within PP_3630at 4126.730 kb on - strand, within PP_3630at 4126.730 kb on - strand, within PP_3630at 4126.778 kb on + strand, within PP_3630at 4126.778 kb on + strand, within PP_3630at 4126.778 kb on + strand, within PP_3630at 4126.778 kb on + strand, within PP_3630at 4126.779 kb on - strand, within PP_3630at 4126.779 kb on - strand, within PP_3630at 4126.779 kb on - strand, within PP_3630at 4126.779 kb on - strand, within PP_3630at 4126.779 kb on - strand, within PP_3630at 4126.779 kb on - strand, within PP_3630at 4126.805 kb on + strand, within PP_3630at 4126.920 kb on + strand, within PP_3630at 4126.939 kb on - strand, within PP_3630at 4126.939 kb on - strand, within PP_3630at 4126.939 kb on - strand, within PP_3630at 4126.966 kb on + strand, within PP_3630at 4126.966 kb on + strand, within PP_3630at 4126.966 kb on + strand, within PP_3630at 4126.967 kb on - strand, within PP_3630at 4127.004 kb on + strand, within PP_3630at 4127.004 kb on + strand, within PP_3630at 4127.005 kb on - strand, within PP_3630at 4127.005 kb on - strand, within PP_3630at 4127.091 kb on + strand, within PP_3630at 4127.091 kb on + strand, within PP_3630at 4127.091 kb on + strand, within PP_3630at 4127.091 kb on + strand, within PP_3630at 4127.091 kb on + strand, within PP_3630at 4127.092 kb on - strand, within PP_3630at 4127.092 kb on - strand, within PP_3630at 4127.092 kb on - strand, within PP_3630at 4127.092 kb on - strand, within PP_3630at 4127.127 kb on - strand, within PP_3630at 4127.211 kb on - strand, within PP_3630at 4127.225 kb on - strand, within PP_3630at 4127.225 kb on - strandat 4127.238 kb on - strandat 4127.391 kb on + strandat 4127.392 kb on - strandat 4127.392 kb on - strandat 4127.392 kb on - strandat 4127.425 kb on - strandat 4127.447 kb on + strandat 4127.517 kb on + strandat 4127.517 kb on + strandat 4127.518 kb on - strandat 4127.773 kb on + strand, within PP_3631at 4127.773 kb on + strand, within PP_3631at 4127.774 kb on - strand, within PP_3631at 4127.774 kb on - strand, within PP_3631at 4127.774 kb on - strand, within PP_3631at 4127.774 kb on - strand, within PP_3631at 4127.774 kb on - strand, within PP_3631at 4127.863 kb on + strand, within PP_3631at 4127.863 kb on + strand, within PP_3631at 4127.864 kb on - strand, within PP_3631at 4127.906 kb on + strand, within PP_3631at 4127.906 kb on + strand, within PP_3631at 4127.906 kb on + strand, within PP_3631at 4127.907 kb on - strand, within PP_3631at 4127.907 kb on - strand, within PP_3631at 4128.181 kb on + strand, within PP_3631at 4128.181 kb on + strand, within PP_3631at 4128.181 kb on + strand, within PP_3631at 4128.181 kb on + strandat 4128.182 kb on - strand, within PP_3631at 4128.182 kb on - strand, within PP_3631at 4128.190 kb on + strand, within PP_3631at 4128.190 kb on + strand, within PP_3631at 4128.190 kb on + strand, within PP_3631at 4128.191 kb on - strand, within PP_3631at 4128.191 kb on - strand, within PP_3631at 4128.351 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1
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4,125,084 + PP_3628 0.89 +0.6
4,125,085 - PP_3628 0.89 -0.3
4,125,085 - PP_3628 0.89 -1.8
4,125,085 - PP_3628 0.89 -0.0
4,125,173 + -0.8
4,125,173 + -0.8
4,125,173 + -1.3
4,125,173 + +0.9
4,125,174 - -0.4
4,125,174 - -0.5
4,125,204 - +0.5
4,125,204 - +0.7
4,125,204 - -0.3
4,125,204 - +0.1
4,125,204 - +0.6
4,125,300 + -0.2
4,125,300 + +0.6
4,125,768 - PP_3629 0.87 -2.2
4,125,800 + -2.6
4,125,800 + -0.5
4,125,801 - -1.4
4,125,868 - -1.1
4,125,875 + -3.1
4,125,875 + +0.5
4,125,927 + -1.0
4,125,927 + -0.6
4,125,983 - -2.3
4,126,147 + -2.1
4,126,147 + -2.6
4,126,147 + +0.2
4,126,147 + -2.8
4,126,147 + -2.9
4,126,147 + -3.8
4,126,148 - +1.6
4,126,148 - +0.5
4,126,219 + PP_3630 0.15 +0.5
4,126,219 + PP_3630 0.15 +0.9
4,126,219 + PP_3630 0.15 +0.5
4,126,219 + PP_3630 0.15 -1.1
4,126,220 - PP_3630 0.15 -0.7
4,126,220 - PP_3630 0.15 -0.8
4,126,240 + PP_3630 0.17 -0.9
4,126,297 + PP_3630 0.21 +1.0
4,126,319 - PP_3630 0.22 -0.8
4,126,364 - PP_3630 0.26 -0.4
4,126,364 - PP_3630 0.26 +2.8
4,126,364 - PP_3630 0.26 +0.5
4,126,364 - PP_3630 0.26 -0.5
4,126,546 + PP_3630 0.39 +2.3
4,126,546 + PP_3630 0.39 -0.7
4,126,546 + PP_3630 0.39 -2.6
4,126,547 - PP_3630 0.39 -1.8
4,126,549 + PP_3630 0.40 -3.3
4,126,549 + PP_3630 0.40 -2.4
4,126,549 + PP_3630 0.40 -0.2
4,126,550 - PP_3630 0.40 -2.1
4,126,612 + PP_3630 0.44 -0.9
4,126,613 - PP_3630 0.44 -1.3
4,126,615 + PP_3630 0.44 -0.8
4,126,615 + PP_3630 0.44 +1.6
4,126,616 - PP_3630 0.45 -2.2
4,126,644 - PP_3630 0.47 -1.1
4,126,696 + PP_3630 0.51 -0.0
4,126,697 - PP_3630 0.51 +1.0
4,126,730 - PP_3630 0.53 -1.2
4,126,730 - PP_3630 0.53 +1.5
4,126,778 + PP_3630 0.57 -1.8
4,126,778 + PP_3630 0.57 -0.9
4,126,778 + PP_3630 0.57 +1.0
4,126,778 + PP_3630 0.57 +0.6
4,126,779 - PP_3630 0.57 -0.7
4,126,779 - PP_3630 0.57 -1.7
4,126,779 - PP_3630 0.57 -0.5
4,126,779 - PP_3630 0.57 -0.8
4,126,779 - PP_3630 0.57 +1.1
4,126,779 - PP_3630 0.57 -1.5
4,126,805 + PP_3630 0.59 -3.6
4,126,920 + PP_3630 0.67 -1.6
4,126,939 - PP_3630 0.69 +0.9
4,126,939 - PP_3630 0.69 -1.7
4,126,939 - PP_3630 0.69 -0.2
4,126,966 + PP_3630 0.71 +0.6
4,126,966 + PP_3630 0.71 -1.0
4,126,966 + PP_3630 0.71 -0.8
4,126,967 - PP_3630 0.71 +0.5
4,127,004 + PP_3630 0.73 -2.8
4,127,004 + PP_3630 0.73 -2.8
4,127,005 - PP_3630 0.74 -1.3
4,127,005 - PP_3630 0.74 +0.5
4,127,091 + PP_3630 0.80 +0.4
4,127,091 + PP_3630 0.80 +1.2
4,127,091 + PP_3630 0.80 +0.5
4,127,091 + PP_3630 0.80 -0.3
4,127,091 + PP_3630 0.80 -1.6
4,127,092 - PP_3630 0.80 -0.7
4,127,092 - PP_3630 0.80 -0.5
4,127,092 - PP_3630 0.80 +1.5
4,127,092 - PP_3630 0.80 -2.8
4,127,127 - PP_3630 0.83 -0.2
4,127,211 - PP_3630 0.89 -1.5
4,127,225 - PP_3630 0.90 -0.8
4,127,225 - +1.5
4,127,238 - -2.4
4,127,391 + -0.5
4,127,392 - +0.5
4,127,392 - +0.4
4,127,392 - +1.5
4,127,425 - -0.0
4,127,447 + -3.4
4,127,517 + +0.3
4,127,517 + +1.1
4,127,518 - +0.1
4,127,773 + PP_3631 0.22 +0.1
4,127,773 + PP_3631 0.22 +0.5
4,127,774 - PP_3631 0.22 +0.6
4,127,774 - PP_3631 0.22 -0.4
4,127,774 - PP_3631 0.22 +0.8
4,127,774 - PP_3631 0.22 -2.7
4,127,774 - PP_3631 0.22 -0.0
4,127,863 + PP_3631 0.35 +0.9
4,127,863 + PP_3631 0.35 +0.1
4,127,864 - PP_3631 0.36 -0.5
4,127,906 + PP_3631 0.42 +1.0
4,127,906 + PP_3631 0.42 -0.5
4,127,906 + PP_3631 0.42 +0.2
4,127,907 - PP_3631 0.42 -2.1
4,127,907 - PP_3631 0.42 +0.0
4,128,181 + PP_3631 0.84 +0.6
4,128,181 + PP_3631 0.84 +1.6
4,128,181 + PP_3631 0.84 -1.8
4,128,181 + -1.1
4,128,182 - PP_3631 0.84 +1.9
4,128,182 - PP_3631 0.84 -0.1
4,128,190 + PP_3631 0.86 +1.2
4,128,190 + PP_3631 0.86 -1.3
4,128,190 + PP_3631 0.86 +1.5
4,128,191 - PP_3631 0.86 -0.2
4,128,191 - PP_3631 0.86 +0.4
4,128,351 - -2.1

Or see this region's nucleotide sequence