Strain Fitness in Pseudomonas putida KT2440 around PP_3611

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,101,739	+				-1.1
4,101,747	+				+0.1
4,101,879	+		PP_3610	0.17	-1.1
4,101,880	-		PP_3610	0.17	+1.8
4,101,880	-		PP_3610	0.17	-0.4
4,102,245	+		PP_3610	0.64	+0.1
4,102,246	-		PP_3610	0.65	-0.5
4,102,246	-		PP_3610	0.65	-2.0
4,102,246	-		PP_3610	0.65	+0.4
4,102,431	+		PP_3610	0.89	-0.7
4,102,431	+		PP_3610	0.89	-0.4
4,102,432	-		PP_3610	0.89	+0.2
4,102,631	+				+2.5
4,102,698	+				-0.3
4,102,698	+				-2.7
4,102,699	-				-1.3
4,102,699	-				-1.8
4,102,847	-		PP_3611	0.31	-1.1
4,102,847	-		PP_3611	0.31	+1.1
4,102,962	+		PP_3611	0.51	-0.7
4,102,962	+		PP_3611	0.51	-0.0
4,102,962	+		PP_3611	0.51	+0.4
4,102,963	-		PP_3611	0.51	-0.8
4,102,963	-		PP_3611	0.51	-0.4
4,102,963	-		PP_3611	0.51	+0.3
4,102,983	+		PP_3611	0.55	-1.3
4,102,983	+		PP_3611	0.55	-0.3
4,102,983	+		PP_3611	0.55	-0.1
4,102,983	+		PP_3611	0.55	+1.1
4,102,983	+		PP_3611	0.55	+0.2
4,102,983	+		PP_3611	0.55	+0.5
4,102,983	+		PP_3611	0.55	-3.0
4,102,984	-		PP_3611	0.55	-2.1
4,102,984	-		PP_3611	0.55	-4.7
4,102,984	-		PP_3611	0.55	-0.6
4,103,008	+		PP_3611	0.59	-2.7
4,103,008	+		PP_3611	0.59	-2.8
4,103,115	-		PP_3611	0.77	-2.3
4,103,162	-		PP_3611	0.86	-2.5
4,103,174	+		PP_3611	0.88	+1.4
4,103,174	+		PP_3611	0.88	-3.0
4,103,213	+				-2.4
4,103,213	+				+0.2
4,103,214	-				+0.4
4,103,231	-				-0.3
4,103,231	-				+0.5
4,103,245	+				+1.1
4,103,246	-				+0.2
4,103,308	+				-1.6
4,103,309	-				-0.8
4,103,309	-				+1.1
4,103,557	+				+0.9
4,103,662	+				+0.1
4,103,825	+		PP_3612	0.17	+1.2
4,103,825	+		PP_3612	0.17	+0.5
4,103,825	+		PP_3612	0.17	+0.4
4,103,826	-		PP_3612	0.17	+0.4
4,103,826	-		PP_3612	0.17	+1.1
4,103,826	-		PP_3612	0.17	+1.5
4,103,826	-		PP_3612	0.17	-0.5
4,103,826	-		PP_3612	0.17	+0.4
4,103,829	+		PP_3612	0.17	+0.8
4,103,830	-		PP_3612	0.17	+1.0
4,103,855	+		PP_3612	0.18	+0.8
4,103,856	-		PP_3612	0.18	+0.1
4,103,856	-		PP_3612	0.18	-3.3
4,103,856	-		PP_3612	0.18	-0.8
4,103,918	+		PP_3612	0.21	-1.5
4,103,919	-		PP_3612	0.21	-3.1
4,104,122	+		PP_3612	0.31	+0.3
4,104,122	+		PP_3612	0.31	-0.5
4,104,122	+		PP_3612	0.31	-0.8
4,104,123	-		PP_3612	0.31	-3.5
4,104,155	+		PP_3612	0.32	+0.9
4,104,155	+		PP_3612	0.32	-0.8
4,104,156	-		PP_3612	0.33	-0.5
4,104,200	+		PP_3612	0.35	-2.0
4,104,201	-		PP_3612	0.35	+0.2
4,104,201	-		PP_3612	0.35	-0.3
4,104,207	-		PP_3612	0.35	+1.0