Strain Fitness in Pseudomonas putida KT2440 around PP_3606

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,096,721	+				-2.5
4,096,729	+				-0.5
4,096,729	+				+0.8
4,096,729	+				-1.0
4,096,729	+				+0.5
4,096,730	-				-1.2
4,096,730	-				+0.9
4,096,730	-				+0.4
4,096,730	-				-0.5
4,096,734	-				-0.8
4,096,855	+		PP_3605	0.11	-0.0
4,096,855	+		PP_3605	0.11	-2.7
4,096,856	-		PP_3605	0.11	-1.7
4,096,856	-		PP_3605	0.11	-0.4
4,097,092	-		PP_3605	0.37	-1.0
4,097,149	+		PP_3605	0.43	-1.0
4,097,149	+		PP_3605	0.43	-0.2
4,097,192	+		PP_3605	0.47	+1.3
4,097,282	-		PP_3605	0.57	-2.3
4,097,309	-		PP_3605	0.60	-1.6
4,097,316	+		PP_3605	0.61	-1.8
4,097,542	-		PP_3605	0.85	-1.5
4,097,570	+		PP_3605	0.88	-0.1
4,097,571	-		PP_3605	0.89	-0.5
4,097,571	-		PP_3605	0.89	+0.1
4,097,571	-		PP_3605	0.89	-1.6
4,097,571	-		PP_3605	0.89	-0.6
4,097,571	-		PP_3605	0.89	-2.6
4,097,571	-		PP_3605	0.89	-0.4
4,097,620	+				+0.0
4,097,620	+				-0.8
4,097,620	+				+0.4
4,097,620	+				-2.8
4,097,620	+				-1.7
4,097,621	-				+0.2
4,097,621	-				-0.4
4,097,621	-				-1.2
4,097,621	-				-1.1
4,097,669	+				+0.3
4,097,669	+				-2.1
4,097,670	-				+0.4
4,097,823	-		PP_3606	0.11	-3.5
4,097,866	+		PP_3606	0.15	+0.1
4,097,985	+		PP_3606	0.28	-2.8
4,097,986	-		PP_3606	0.28	-3.2
4,098,052	+		PP_3606	0.35	-0.1
4,098,057	+		PP_3606	0.35	-0.7
4,098,057	+		PP_3606	0.35	-3.0
4,098,178	-		PP_3606	0.47	+0.1
4,098,186	+		PP_3606	0.48	+1.5
4,098,187	-		PP_3606	0.48	-3.1
4,098,253	+		PP_3606	0.55	+0.0
4,098,253	+		PP_3606	0.55	-1.7
4,098,254	-		PP_3606	0.55	-2.3
4,098,287	-		PP_3606	0.59	+1.4
4,098,287	-		PP_3606	0.59	-1.2
4,098,304	+		PP_3606	0.60	+1.1
4,098,304	+		PP_3606	0.60	-1.3
4,098,304	+		PP_3606	0.60	+0.8
4,098,305	-		PP_3606	0.61	-1.4
4,098,305	-		PP_3606	0.61	-0.8
4,098,305	-		PP_3606	0.61	-1.0
4,098,305	-		PP_3606	0.61	-0.9
4,098,409	+		PP_3606	0.71	+1.3
4,098,409	+		PP_3606	0.71	-0.8
4,098,409	+		PP_3606	0.71	-2.2
4,098,409	+		PP_3606	0.71	-2.9
4,098,410	-		PP_3606	0.71	+0.9
4,098,410	-		PP_3606	0.71	-2.3
4,098,410	-		PP_3606	0.71	-1.4
4,098,627	+				+0.4
4,098,627	+				-1.0
4,098,628	-				-2.2
4,098,665	+				+1.5
4,098,666	-				-0.2
4,098,823	+				+0.6
4,098,823	+				-2.8
4,098,824	-				+0.6
4,098,870	-				-1.2
4,098,885	+				-3.2
4,098,914	+				-0.1
4,098,914	+				-1.1
4,098,914	+				-3.6
4,098,914	+				-2.3
4,098,914	+				+0.1
4,098,914	+				-0.4
4,098,915	-				-2.0
4,098,915	-				-2.0
4,098,915	-				-1.0
4,098,915	-				-0.4
4,098,915	-				+0.6
4,098,915	-				-0.7
4,098,915	-				-2.9
4,098,915	-				-2.2
4,098,915	-				-0.6
4,098,915	-				+0.7
4,098,919	+				-1.4
4,098,920	-				-3.2
4,098,942	+		PP_3607	0.11	-2.6
4,098,943	-		PP_3607	0.12	+1.1
4,098,943	-		PP_3607	0.12	-0.5
4,098,943	-		PP_3607	0.12	-0.6
4,098,943	-		PP_3607	0.12	+1.0
4,098,964	-		PP_3607	0.13	+0.2
4,098,981	+		PP_3607	0.15	+1.5
4,099,088	+		PP_3607	0.23	-2.1
4,099,106	+		PP_3607	0.25	+0.3
4,099,240	+		PP_3607	0.36	-1.7
4,099,240	+		PP_3607	0.36	-0.1
4,099,241	-		PP_3607	0.36	-0.1
4,099,278	+		PP_3607	0.39	-0.2
4,099,588	+		PP_3607	0.65	-2.5