Strain Fitness in Pseudomonas putida KT2440 around PP_3605

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,095,765	+		PP_5607	0.15	-0.3
4,095,765	+		PP_5607	0.15	+1.9
4,095,765	+		PP_5607	0.15	+0.1
4,095,766	-		PP_5607	0.15	+1.7
4,095,853	+		PP_5607	0.28	+0.2
4,095,853	+		PP_5607	0.28	+0.2
4,096,082	-		PP_5607	0.63	-1.4
4,096,093	+		PP_5607	0.65	-1.0
4,096,094	-		PP_5607	0.65	+0.4
4,096,215	+		PP_5607	0.84	-3.2
4,096,215	+		PP_5607	0.84	-2.5
4,096,226	+		PP_5607	0.86	+0.2
4,096,227	-		PP_5607	0.86	+1.0
4,096,227	-		PP_5607	0.86	-0.2
4,096,227	-		PP_5607	0.86	-2.3
4,096,230	+		PP_5607	0.86	-1.1
4,096,230	+		PP_5607	0.86	-0.8
4,096,230	+		PP_5607	0.86	+2.2
4,096,231	-		PP_5607	0.86	+1.1
4,096,231	-		PP_5607	0.86	+0.7
4,096,231	-		PP_5607	0.86	+1.7
4,096,383	-				-1.2
4,096,407	+				+1.5
4,096,554	-		PP_5608	0.48	+0.8
4,096,554	-		PP_5608	0.48	-0.6
4,096,579	-		PP_5608	0.56	-1.0
4,096,637	+		PP_5608	0.74	+0.5
4,096,637	+		PP_5608	0.74	-1.1
4,096,637	+		PP_5608	0.74	-3.5
4,096,682	+		PP_5608	0.87	-2.2
4,096,682	+		PP_5608	0.87	+0.0
4,096,721	+				-2.5
4,096,729	+				-0.5
4,096,729	+				+0.8
4,096,729	+				-1.0
4,096,729	+				+0.5
4,096,730	-				-1.2
4,096,730	-				+0.9
4,096,730	-				+0.4
4,096,730	-				-0.5
4,096,734	-				-0.8
4,096,855	+		PP_3605	0.11	-0.0
4,096,855	+		PP_3605	0.11	-2.7
4,096,856	-		PP_3605	0.11	-1.7
4,096,856	-		PP_3605	0.11	-0.4
4,097,092	-		PP_3605	0.37	-1.0
4,097,149	+		PP_3605	0.43	-1.0
4,097,149	+		PP_3605	0.43	-0.2
4,097,192	+		PP_3605	0.47	+1.3
4,097,282	-		PP_3605	0.57	-2.3
4,097,309	-		PP_3605	0.60	-1.6
4,097,316	+		PP_3605	0.61	-1.8
4,097,542	-		PP_3605	0.85	-1.5
4,097,570	+		PP_3605	0.88	-0.1
4,097,571	-		PP_3605	0.89	-0.5
4,097,571	-		PP_3605	0.89	+0.1
4,097,571	-		PP_3605	0.89	-1.6
4,097,571	-		PP_3605	0.89	-0.6
4,097,571	-		PP_3605	0.89	-2.6
4,097,571	-		PP_3605	0.89	-0.4
4,097,620	+				+0.0
4,097,620	+				-0.8
4,097,620	+				+0.4
4,097,620	+				-2.8
4,097,620	+				-1.7
4,097,621	-				+0.2
4,097,621	-				-0.4
4,097,621	-				-1.2
4,097,621	-				-1.1
4,097,669	+				+0.3
4,097,669	+				-2.1
4,097,670	-				+0.4
4,097,823	-		PP_3606	0.11	-3.5
4,097,866	+		PP_3606	0.15	+0.1
4,097,985	+		PP_3606	0.28	-2.8
4,097,986	-		PP_3606	0.28	-3.2
4,098,052	+		PP_3606	0.35	-0.1
4,098,057	+		PP_3606	0.35	-0.7
4,098,057	+		PP_3606	0.35	-3.0
4,098,178	-		PP_3606	0.47	+0.1
4,098,186	+		PP_3606	0.48	+1.5
4,098,187	-		PP_3606	0.48	-3.1
4,098,253	+		PP_3606	0.55	+0.0
4,098,253	+		PP_3606	0.55	-1.7
4,098,254	-		PP_3606	0.55	-2.3
4,098,287	-		PP_3606	0.59	+1.4
4,098,287	-		PP_3606	0.59	-1.2
4,098,304	+		PP_3606	0.60	+1.1
4,098,304	+		PP_3606	0.60	-1.3
4,098,304	+		PP_3606	0.60	+0.8
4,098,305	-		PP_3606	0.61	-1.4
4,098,305	-		PP_3606	0.61	-0.8
4,098,305	-		PP_3606	0.61	-1.0
4,098,305	-		PP_3606	0.61	-0.9
4,098,409	+		PP_3606	0.71	+1.3
4,098,409	+		PP_3606	0.71	-0.8
4,098,409	+		PP_3606	0.71	-2.2
4,098,409	+		PP_3606	0.71	-2.9
4,098,410	-		PP_3606	0.71	+0.9
4,098,410	-		PP_3606	0.71	-2.3
4,098,410	-		PP_3606	0.71	-1.4
4,098,627	+				+0.4
4,098,627	+				-1.0
4,098,628	-				-2.2
4,098,665	+				+1.5
4,098,666	-				-0.2