Strain Fitness in Pseudomonas putida KT2440 around PP_3602

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,092,228	+		PP_3601	0.54	-0.4
4,092,286	+		PP_3601	0.58	-1.6
4,092,361	+		PP_3601	0.62	-0.6
4,092,362	-		PP_3601	0.62	+0.8
4,092,436	+		PP_3601	0.67	+1.5
4,092,437	-		PP_3601	0.67	-2.5
4,092,847	+				-0.8
4,092,848	-				+0.5
4,092,848	-				-0.0
4,092,850	+				-2.3
4,092,939	+				-1.8
4,093,025	-				-0.6
4,093,025	-				+1.8
4,093,107	-				+0.9
4,093,425	+		PP_3602	0.27	+0.3
4,093,425	+		PP_3602	0.27	+0.6
4,093,551	+		PP_3602	0.35	+0.5
4,093,551	+		PP_3602	0.35	-2.2
4,093,551	+		PP_3602	0.35	-0.3
4,093,552	-		PP_3602	0.35	-1.3
4,093,656	+		PP_3602	0.41	-1.5
4,093,657	-		PP_3602	0.41	+0.3
4,093,946	+		PP_3602	0.60	-0.5
4,093,946	+		PP_3602	0.60	-0.2
4,093,946	+		PP_3602	0.60	-1.1
4,093,946	+		PP_3602	0.60	-3.5
4,093,947	-		PP_3602	0.60	-0.4
4,093,976	+		PP_3602	0.61	-3.5
4,093,976	+		PP_3602	0.61	-1.3
4,094,030	+		PP_3602	0.65	-0.6
4,094,030	+		PP_3602	0.65	-2.9
4,094,030	+		PP_3602	0.65	+2.4
4,094,030	+		PP_3602	0.65	-1.5
4,094,031	-		PP_3602	0.65	-2.7
4,094,031	-		PP_3602	0.65	-2.6
4,094,489	+				-1.4
4,094,642	-				-1.3
4,094,680	-				+0.6
4,094,702	+				+0.9
4,094,702	+				+0.3
4,094,703	-				+0.6
4,094,837	+		PP_3603	0.15	-2.0
4,094,873	+		PP_3603	0.20	+1.5
4,094,874	-		PP_3603	0.20	-2.4
4,094,874	-		PP_3603	0.20	-0.5
4,094,874	-		PP_3603	0.20	+0.8
4,094,874	-		PP_3603	0.20	-1.5
4,094,966	+		PP_3603	0.32	-0.1
4,094,966	+		PP_3603	0.32	-1.3
4,094,967	-		PP_3603	0.32	-0.1
4,095,213	+		PP_3603	0.65	-0.1
4,095,237	+		PP_3603	0.68	-0.1
4,095,237	+		PP_3603	0.68	-1.3
4,095,238	-		PP_3603	0.68	-1.0
4,095,238	-		PP_3603	0.68	-2.0
4,095,259	+		PP_3603	0.71	-1.5
4,095,259	+		PP_3603	0.71	-0.1
4,095,259	+		PP_3603	0.71	-1.8
4,095,259	+		PP_3603	0.71	-2.1
4,095,260	-		PP_3603	0.71	-0.1
4,095,260	-		PP_3603	0.71	+0.2
4,095,451	+				-0.7
4,095,476	+				-1.5
4,095,505	+				+0.6
4,095,521	-				+0.5
4,095,530	+				-0.5
4,095,530	+				-2.3
4,095,531	-				-1.1
4,095,548	+				+0.3
4,095,548	+				-0.3
4,095,548	+				-3.0
4,095,548	+				-0.1
4,095,549	-				+1.5
4,095,549	-				-2.9
4,095,549	-				-1.1
4,095,549	-				-1.6
4,095,549	-				-2.8
4,095,549	-				+0.3