Experiment: P. putida PUT 7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3599 and PP_3600 are separated by 104 nucleotides PP_3600 and PP_3601 are separated by 77 nucleotides
PP_3599: PP_3599 - 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data) , at 4,088,934 to 4,089,845
_3599
PP_3600: PP_3600 - glucarate transporter, at 4,089,950 to 4,091,314
_3600
PP_3601: PP_3601 - galactarate dehydratase, at 4,091,392 to 4,092,945
_3601
Position (kb)
4089
4090
4091
4092 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4089.030 kb on + strand, within PP_3599 at 4089.030 kb on + strand, within PP_3599 at 4089.127 kb on - strand, within PP_3599 at 4089.273 kb on + strand, within PP_3599 at 4089.274 kb on - strand, within PP_3599 at 4089.274 kb on - strand, within PP_3599 at 4089.274 kb on - strand, within PP_3599 at 4089.355 kb on - strand, within PP_3599 at 4089.499 kb on - strand, within PP_3599 at 4089.528 kb on + strand, within PP_3599 at 4089.540 kb on + strand, within PP_3599 at 4089.540 kb on + strand, within PP_3599 at 4089.541 kb on - strand, within PP_3599 at 4089.541 kb on - strand, within PP_3599 at 4089.564 kb on + strand, within PP_3599 at 4089.564 kb on + strand, within PP_3599 at 4089.564 kb on + strand, within PP_3599 at 4089.565 kb on - strand at 4089.612 kb on + strand, within PP_3599 at 4089.613 kb on - strand, within PP_3599 at 4089.679 kb on - strand, within PP_3599 at 4089.750 kb on + strand, within PP_3599 at 4089.802 kb on - strand at 4089.902 kb on + strand at 4089.931 kb on + strand at 4089.931 kb on + strand at 4089.941 kb on - strand at 4089.941 kb on - strand at 4089.962 kb on - strand at 4089.981 kb on - strand at 4090.022 kb on + strand at 4090.022 kb on + strand at 4090.022 kb on + strand at 4090.023 kb on - strand at 4090.045 kb on + strand at 4090.090 kb on - strand, within PP_3600 at 4090.100 kb on + strand, within PP_3600 at 4090.100 kb on + strand, within PP_3600 at 4090.100 kb on + strand, within PP_3600 at 4090.100 kb on + strand, within PP_3600 at 4090.101 kb on - strand at 4090.124 kb on - strand, within PP_3600 at 4090.127 kb on + strand, within PP_3600 at 4090.128 kb on - strand, within PP_3600 at 4090.128 kb on - strand, within PP_3600 at 4090.128 kb on - strand, within PP_3600 at 4090.187 kb on + strand, within PP_3600 at 4090.529 kb on + strand, within PP_3600 at 4090.529 kb on + strand, within PP_3600 at 4090.529 kb on + strand, within PP_3600 at 4090.529 kb on + strand, within PP_3600 at 4090.529 kb on + strand, within PP_3600 at 4090.643 kb on + strand, within PP_3600 at 4090.643 kb on + strand, within PP_3600 at 4090.644 kb on - strand, within PP_3600 at 4090.683 kb on + strand, within PP_3600 at 4090.684 kb on - strand, within PP_3600 at 4090.685 kb on + strand, within PP_3600 at 4090.718 kb on + strand, within PP_3600 at 4090.719 kb on - strand, within PP_3600 at 4090.719 kb on - strand, within PP_3600 at 4090.719 kb on - strand, within PP_3600 at 4090.745 kb on + strand, within PP_3600 at 4090.746 kb on - strand, within PP_3600 at 4090.746 kb on - strand, within PP_3600 at 4090.819 kb on + strand, within PP_3600 at 4090.946 kb on + strand, within PP_3600 at 4090.946 kb on + strand, within PP_3600 at 4090.946 kb on + strand, within PP_3600 at 4090.946 kb on + strand, within PP_3600 at 4090.947 kb on - strand, within PP_3600 at 4090.947 kb on - strand, within PP_3600 at 4091.129 kb on + strand, within PP_3600 at 4091.130 kb on - strand, within PP_3600 at 4091.171 kb on + strand, within PP_3600 at 4091.171 kb on + strand, within PP_3600 at 4091.172 kb on - strand at 4091.172 kb on - strand, within PP_3600 at 4091.207 kb on + strand at 4091.207 kb on + strand at 4091.207 kb on + strand at 4091.237 kb on - strand at 4091.355 kb on + strand at 4091.355 kb on + strand at 4091.356 kb on - strand at 4091.356 kb on - strand at 4091.356 kb on - strand at 4091.380 kb on + strand at 4091.380 kb on + strand at 4091.380 kb on + strand at 4091.381 kb on - strand at 4091.381 kb on - strand at 4091.425 kb on + strand at 4091.541 kb on + strand at 4091.542 kb on - strand at 4091.542 kb on - strand at 4091.749 kb on + strand, within PP_3601 at 4091.785 kb on - strand, within PP_3601 at 4091.872 kb on + strand, within PP_3601 at 4091.873 kb on - strand, within PP_3601 at 4091.873 kb on - strand, within PP_3601 at 4091.911 kb on + strand, within PP_3601 at 4091.912 kb on - strand, within PP_3601 at 4091.947 kb on + strand, within PP_3601 at 4091.947 kb on + strand, within PP_3601 at 4091.947 kb on + strand, within PP_3601 at 4091.948 kb on - strand, within PP_3601 at 4091.948 kb on - strand, within PP_3601 at 4091.948 kb on - strand, within PP_3601 at 4091.988 kb on + strand, within PP_3601 at 4092.228 kb on + strand, within PP_3601 at 4092.286 kb on + strand, within PP_3601
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1 remove 4,089,030 + PP_3599 0.11 -1.1 4,089,030 + PP_3599 0.11 -2.6 4,089,127 - PP_3599 0.21 -3.1 4,089,273 + PP_3599 0.37 -1.7 4,089,274 - PP_3599 0.37 -1.8 4,089,274 - PP_3599 0.37 -0.6 4,089,274 - PP_3599 0.37 -1.1 4,089,355 - PP_3599 0.46 -0.2 4,089,499 - PP_3599 0.62 -1.6 4,089,528 + PP_3599 0.65 -2.3 4,089,540 + PP_3599 0.66 -0.0 4,089,540 + PP_3599 0.66 -0.0 4,089,541 - PP_3599 0.67 -0.0 4,089,541 - PP_3599 0.67 +0.4 4,089,564 + PP_3599 0.69 -1.3 4,089,564 + PP_3599 0.69 -0.7 4,089,564 + PP_3599 0.69 -2.7 4,089,565 - +1.5 4,089,612 + PP_3599 0.74 -0.1 4,089,613 - PP_3599 0.74 -0.1 4,089,679 - PP_3599 0.82 -0.6 4,089,750 + PP_3599 0.89 -0.1 4,089,802 - -2.7 4,089,902 + +0.1 4,089,931 + -1.4 4,089,931 + +0.9 4,089,941 - +0.4 4,089,941 - -3.0 4,089,962 - +0.4 4,089,981 - -2.7 4,090,022 + -0.4 4,090,022 + -0.4 4,090,022 + +0.8 4,090,023 - +1.1 4,090,045 + +0.6 4,090,090 - PP_3600 0.10 -2.2 4,090,100 + PP_3600 0.11 -0.1 4,090,100 + PP_3600 0.11 -0.8 4,090,100 + PP_3600 0.11 +0.0 4,090,100 + PP_3600 0.11 -0.2 4,090,101 - +0.5 4,090,124 - PP_3600 0.13 -2.0 4,090,127 + PP_3600 0.13 -0.1 4,090,128 - PP_3600 0.13 -2.3 4,090,128 - PP_3600 0.13 +0.7 4,090,128 - PP_3600 0.13 -0.3 4,090,187 + PP_3600 0.17 +0.6 4,090,529 + PP_3600 0.42 +1.8 4,090,529 + PP_3600 0.42 -0.2 4,090,529 + PP_3600 0.42 -2.9 4,090,529 + PP_3600 0.42 +0.6 4,090,529 + PP_3600 0.42 -0.6 4,090,643 + PP_3600 0.51 -0.3 4,090,643 + PP_3600 0.51 -1.8 4,090,644 - PP_3600 0.51 -0.5 4,090,683 + PP_3600 0.54 -2.5 4,090,684 - PP_3600 0.54 -1.7 4,090,685 + PP_3600 0.54 +0.7 4,090,718 + PP_3600 0.56 -1.6 4,090,719 - PP_3600 0.56 -3.6 4,090,719 - PP_3600 0.56 +0.1 4,090,719 - PP_3600 0.56 -3.2 4,090,745 + PP_3600 0.58 -0.5 4,090,746 - PP_3600 0.58 +0.2 4,090,746 - PP_3600 0.58 -0.3 4,090,819 + PP_3600 0.64 -0.1 4,090,946 + PP_3600 0.73 -0.1 4,090,946 + PP_3600 0.73 -1.3 4,090,946 + PP_3600 0.73 -0.4 4,090,946 + PP_3600 0.73 +0.8 4,090,947 - PP_3600 0.73 -1.3 4,090,947 - PP_3600 0.73 +0.5 4,091,129 + PP_3600 0.86 +0.6 4,091,130 - PP_3600 0.86 -1.8 4,091,171 + PP_3600 0.89 +0.7 4,091,171 + PP_3600 0.89 -2.3 4,091,172 - -0.1 4,091,172 - PP_3600 0.90 -2.1 4,091,207 + +0.2 4,091,207 + -0.8 4,091,207 + -2.3 4,091,237 - -2.3 4,091,355 + -0.2 4,091,355 + +2.5 4,091,356 - +1.2 4,091,356 - -2.3 4,091,356 - -1.1 4,091,380 + -1.8 4,091,380 + -0.4 4,091,380 + +0.9 4,091,381 - +1.0 4,091,381 - -2.3 4,091,425 + -0.1 4,091,541 + +1.0 4,091,542 - +1.2 4,091,542 - +1.9 4,091,749 + PP_3601 0.23 -0.6 4,091,785 - PP_3601 0.25 -3.4 4,091,872 + PP_3601 0.31 -0.2 4,091,873 - PP_3601 0.31 -3.0 4,091,873 - PP_3601 0.31 +1.9 4,091,911 + PP_3601 0.33 -2.1 4,091,912 - PP_3601 0.33 +0.3 4,091,947 + PP_3601 0.36 -2.5 4,091,947 + PP_3601 0.36 -0.6 4,091,947 + PP_3601 0.36 +0.2 4,091,948 - PP_3601 0.36 +0.8 4,091,948 - PP_3601 0.36 -1.5 4,091,948 - PP_3601 0.36 -1.1 4,091,988 + PP_3601 0.38 +1.5 4,092,228 + PP_3601 0.54 -0.4 4,092,286 + PP_3601 0.58 -1.6
Or see this region's nucleotide sequence