Strain Fitness in Pseudomonas putida KT2440 around PP_3600

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,089,030	+		PP_3599	0.11	-1.1
4,089,030	+		PP_3599	0.11	-2.6
4,089,127	-		PP_3599	0.21	-3.1
4,089,273	+		PP_3599	0.37	-1.7
4,089,274	-		PP_3599	0.37	-1.8
4,089,274	-		PP_3599	0.37	-0.6
4,089,274	-		PP_3599	0.37	-1.1
4,089,355	-		PP_3599	0.46	-0.2
4,089,499	-		PP_3599	0.62	-1.6
4,089,528	+		PP_3599	0.65	-2.3
4,089,540	+		PP_3599	0.66	-0.0
4,089,540	+		PP_3599	0.66	-0.0
4,089,541	-		PP_3599	0.67	-0.0
4,089,541	-		PP_3599	0.67	+0.4
4,089,564	+		PP_3599	0.69	-1.3
4,089,564	+		PP_3599	0.69	-0.7
4,089,564	+		PP_3599	0.69	-2.7
4,089,565	-				+1.5
4,089,612	+		PP_3599	0.74	-0.1
4,089,613	-		PP_3599	0.74	-0.1
4,089,679	-		PP_3599	0.82	-0.6
4,089,750	+		PP_3599	0.89	-0.1
4,089,802	-				-2.7
4,089,902	+				+0.1
4,089,931	+				-1.4
4,089,931	+				+0.9
4,089,941	-				+0.4
4,089,941	-				-3.0
4,089,962	-				+0.4
4,089,981	-				-2.7
4,090,022	+				-0.4
4,090,022	+				-0.4
4,090,022	+				+0.8
4,090,023	-				+1.1
4,090,045	+				+0.6
4,090,090	-		PP_3600	0.10	-2.2
4,090,100	+		PP_3600	0.11	-0.1
4,090,100	+		PP_3600	0.11	-0.8
4,090,100	+		PP_3600	0.11	+0.0
4,090,100	+		PP_3600	0.11	-0.2
4,090,101	-				+0.5
4,090,124	-		PP_3600	0.13	-2.0
4,090,127	+		PP_3600	0.13	-0.1
4,090,128	-		PP_3600	0.13	-2.3
4,090,128	-		PP_3600	0.13	+0.7
4,090,128	-		PP_3600	0.13	-0.3
4,090,187	+		PP_3600	0.17	+0.6
4,090,529	+		PP_3600	0.42	+1.8
4,090,529	+		PP_3600	0.42	-0.2
4,090,529	+		PP_3600	0.42	-2.9
4,090,529	+		PP_3600	0.42	+0.6
4,090,529	+		PP_3600	0.42	-0.6
4,090,643	+		PP_3600	0.51	-0.3
4,090,643	+		PP_3600	0.51	-1.8
4,090,644	-		PP_3600	0.51	-0.5
4,090,683	+		PP_3600	0.54	-2.5
4,090,684	-		PP_3600	0.54	-1.7
4,090,685	+		PP_3600	0.54	+0.7
4,090,718	+		PP_3600	0.56	-1.6
4,090,719	-		PP_3600	0.56	-3.6
4,090,719	-		PP_3600	0.56	+0.1
4,090,719	-		PP_3600	0.56	-3.2
4,090,745	+		PP_3600	0.58	-0.5
4,090,746	-		PP_3600	0.58	+0.2
4,090,746	-		PP_3600	0.58	-0.3
4,090,819	+		PP_3600	0.64	-0.1
4,090,946	+		PP_3600	0.73	-0.1
4,090,946	+		PP_3600	0.73	-1.3
4,090,946	+		PP_3600	0.73	-0.4
4,090,946	+		PP_3600	0.73	+0.8
4,090,947	-		PP_3600	0.73	-1.3
4,090,947	-		PP_3600	0.73	+0.5
4,091,129	+		PP_3600	0.86	+0.6
4,091,130	-		PP_3600	0.86	-1.8
4,091,171	+		PP_3600	0.89	+0.7
4,091,171	+		PP_3600	0.89	-2.3
4,091,172	-				-0.1
4,091,172	-		PP_3600	0.90	-2.1
4,091,207	+				+0.2
4,091,207	+				-0.8
4,091,207	+				-2.3
4,091,237	-				-2.3
4,091,355	+				-0.2
4,091,355	+				+2.5
4,091,356	-				+1.2
4,091,356	-				-2.3
4,091,356	-				-1.1
4,091,380	+				-1.8
4,091,380	+				-0.4
4,091,380	+				+0.9
4,091,381	-				+1.0
4,091,381	-				-2.3
4,091,425	+				-0.1
4,091,541	+				+1.0
4,091,542	-				+1.2
4,091,542	-				+1.9
4,091,749	+		PP_3601	0.23	-0.6
4,091,785	-		PP_3601	0.25	-3.4
4,091,872	+		PP_3601	0.31	-0.2
4,091,873	-		PP_3601	0.31	-3.0
4,091,873	-		PP_3601	0.31	+1.9
4,091,911	+		PP_3601	0.33	-2.1
4,091,912	-		PP_3601	0.33	+0.3
4,091,947	+		PP_3601	0.36	-2.5
4,091,947	+		PP_3601	0.36	-0.6
4,091,947	+		PP_3601	0.36	+0.2
4,091,948	-		PP_3601	0.36	+0.8
4,091,948	-		PP_3601	0.36	-1.5
4,091,948	-		PP_3601	0.36	-1.1
4,091,988	+		PP_3601	0.38	+1.5
4,092,228	+		PP_3601	0.54	-0.4
4,092,286	+		PP_3601	0.58	-1.6