Strain Fitness in Pseudomonas putida KT2440 around PP_3565

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
4,043,207	+		PP_3564	0.45	-2.5
4,043,208	-		PP_3564	0.45	+0.6
4,043,208	-		PP_3564	0.45	-2.7
4,043,225	+		PP_3564	0.47	+0.7
4,043,226	-		PP_3564	0.47	+0.5
4,043,274	+		PP_3564	0.52	+0.8
4,043,274	+		PP_3564	0.52	+1.4
4,043,275	-		PP_3564	0.52	-0.5
4,043,519	+		PP_3564	0.77	+0.8
4,043,520	-		PP_3564	0.77	+1.0
4,043,637	+		PP_3564	0.89	-2.5
4,043,780	+				+0.4
4,043,781	-				-0.2
4,043,810	+				-2.5
4,043,810	+				+0.1
4,043,810	+				-1.7
4,043,810	+				-0.1
4,043,811	-				-0.4
4,043,811	-				-3.4
4,043,811	-				-2.7
4,043,872	+				+1.3
4,043,872	+				-0.1
4,043,872	+				+2.0
4,043,873	-				+1.1
4,043,947	+		PP_3565	0.16	+0.6
4,043,948	-		PP_3565	0.16	-1.0
4,044,091	+		PP_3565	0.40	-0.2
4,044,116	+		PP_3565	0.44	-0.7
4,044,117	-		PP_3565	0.44	-2.6
4,044,117	-		PP_3565	0.44	-0.4
4,044,235	+		PP_3565	0.63	+1.6
4,044,235	+		PP_3565	0.63	-1.6
4,044,235	+		PP_3565	0.63	-3.3
4,044,235	+		PP_3565	0.63	-1.7
4,044,235	+		PP_3565	0.63	-2.3
4,044,235	+		PP_3565	0.63	-4.1
4,044,235	+		PP_3565	0.63	-1.2
4,044,235	+		PP_3565	0.63	-0.3
4,044,236	-		PP_3565	0.63	-0.3
4,044,236	-		PP_3565	0.63	-0.4
4,044,659	+		PP_3566	0.13	-1.4
4,044,659	+		PP_3566	0.13	+1.1
4,044,659	+		PP_3566	0.13	-1.0
4,044,660	-		PP_3566	0.13	-0.3
4,044,701	+		PP_3566	0.16	+0.8
4,044,701	+		PP_3566	0.16	-1.2
4,044,702	-		PP_3566	0.16	-1.2
4,044,702	-		PP_3566	0.16	+0.6
4,044,899	-		PP_3566	0.33	+0.4
4,044,899	-		PP_3566	0.33	-0.1
4,044,992	+		PP_3566	0.40	-0.4
4,045,025	+		PP_3566	0.43	-1.0
4,045,094	+		PP_3566	0.49	+0.1
4,045,094	+		PP_3566	0.49	+0.7
4,045,094	+		PP_3566	0.49	-2.4
4,045,094	+		PP_3566	0.49	-0.1
4,045,095	-		PP_3566	0.49	-1.2
4,045,095	-		PP_3566	0.49	-0.1
4,045,095	-		PP_3566	0.49	+1.1
4,045,095	-		PP_3566	0.49	-0.8
4,045,269	+		PP_3566	0.63	-2.2
4,045,418	-		PP_3566	0.76	+0.5
4,045,418	-		PP_3566	0.76	-0.0