Strain Fitness in Pseudomonas putida KT2440 around PP_3518

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,990,628	+				+0.2
3,990,628	+				-0.8
3,990,658	-				-0.6
3,990,663	+				+0.1
3,990,664	-				-0.3
3,990,673	+				-2.3
3,990,673	+				+2.5
3,990,673	+				+1.2
3,990,674	-				-1.2
3,990,887	+		PP_3517	0.17	+4.3
3,990,887	+		PP_3517	0.17	-2.3
3,990,944	+		PP_3517	0.24	+2.6
3,990,944	+		PP_3517	0.24	+0.4
3,990,945	-		PP_3517	0.24	+0.9
3,990,945	-		PP_3517	0.24	-3.0
3,990,950	+		PP_3517	0.24	-0.3
3,990,951	-		PP_3517	0.24	+0.5
3,991,007	+		PP_3517	0.31	-1.5
3,991,008	-		PP_3517	0.31	+0.4
3,991,130	+		PP_3517	0.44	+0.1
3,991,170	-		PP_3517	0.49	+0.8
3,991,307	-		PP_3517	0.64	-0.2
3,991,404	+		PP_3517	0.75	+0.2
3,991,404	+		PP_3517	0.75	+0.1
3,991,442	+		PP_3517	0.79	-0.3
3,991,442	+		PP_3517	0.79	+1.2
3,991,442	+		PP_3517	0.79	-0.6
3,991,442	+		PP_3517	0.79	-0.8
3,991,442	+		PP_3517	0.79	-1.6
3,991,443	-		PP_3517	0.79	+1.2
3,991,443	-		PP_3517	0.79	-2.4
3,991,443	-		PP_3517	0.79	+1.2
3,991,727	+				+0.6
3,992,173	+		PP_3518	0.38	-1.6
3,992,258	-		PP_3518	0.44	+1.8
3,992,258	-		PP_3518	0.44	+1.0
3,992,374	+		PP_3518	0.52	+0.7
3,992,374	+		PP_3518	0.52	+0.2
3,992,374	+		PP_3518	0.52	-2.6
3,992,377	+		PP_3518	0.52	+0.7
3,992,377	+		PP_3518	0.52	-2.6
3,992,377	+		PP_3518	0.52	-2.4
3,992,377	+		PP_3518	0.52	+1.4
3,992,377	+		PP_3518	0.52	+1.5
3,992,378	-		PP_3518	0.52	-1.4
3,992,378	-		PP_3518	0.52	+1.0
3,992,378	-		PP_3518	0.52	-0.6
3,992,378	-		PP_3518	0.52	+1.7
3,992,378	-		PP_3518	0.52	+0.6
3,992,378	-		PP_3518	0.52	-2.0
3,992,413	+		PP_3518	0.55	+1.4
3,992,413	+		PP_3518	0.55	+1.6
3,992,413	+		PP_3518	0.55	+0.1
3,992,429	+		PP_3518	0.56	-1.6
3,992,431	+		PP_3518	0.56	+0.6
3,992,431	+				+0.7
3,992,432	-		PP_3518	0.56	+0.5
3,992,432	-		PP_3518	0.56	+0.7
3,992,432	-		PP_3518	0.56	+0.5
3,992,432	-		PP_3518	0.56	+1.3
3,992,443	+		PP_3518	0.57	+0.3
3,992,443	+		PP_3518	0.57	-0.3
3,992,443	+		PP_3518	0.57	+0.8
3,992,443	+		PP_3518	0.57	-0.3
3,992,443	+		PP_3518	0.57	-2.5
3,992,443	+		PP_3518	0.57	+1.0
3,992,443	+		PP_3518	0.57	-1.6
3,992,444	-		PP_3518	0.57	-0.9
3,992,444	-		PP_3518	0.57	+3.3
3,992,444	-		PP_3518	0.57	+0.6
3,992,444	-		PP_3518	0.57	+1.7
3,992,444	-		PP_3518	0.57	+1.0
3,992,444	-		PP_3518	0.57	+0.2
3,992,562	+		PP_3518	0.65	-1.0
3,992,739	+		PP_3518	0.77	-2.8
3,992,739	+		PP_3518	0.77	+0.0
3,992,744	+		PP_3518	0.78	-2.1
3,992,887	+		PP_3518	0.87	-1.5
3,992,887	+		PP_3518	0.87	-2.9
3,992,887	+		PP_3518	0.87	-0.0
3,992,887	+		PP_3518	0.87	-1.0
3,992,888	-		PP_3518	0.87	-0.3
3,992,950	-				+1.7
3,993,074	-				-0.8
3,993,107	+				+1.6
3,993,107	+				-0.5
3,993,189	+				-2.0
3,993,190	-				+0.4
3,993,190	-				+2.8
3,993,190	-				-2.0
3,993,190	-				+0.2
3,993,191	+				+2.3
3,993,191	+				+0.7
3,993,225	-				+1.0
3,993,292	+				-1.0
3,993,293	-				+0.1
3,993,308	+				-0.1
3,993,408	-		PP_3519	0.37	+1.4
3,993,605	+				-2.7
3,993,605	+				+0.5
3,993,605	+				+0.7
3,993,612	+				+0.7
3,993,860	+		PP_3520	0.30	-0.9
3,993,861	-		PP_3520	0.30	-1.8
3,993,911	+		PP_3520	0.37	+0.3
3,993,911	+		PP_3520	0.37	-0.3
3,993,912	-		PP_3520	0.37	+1.3
3,993,912	-		PP_3520	0.37	+0.3
3,993,951	-		PP_3520	0.42	+2.0
3,993,957	+		PP_3520	0.43	+1.0
3,993,958	-				+2.7
3,993,958	-		PP_3520	0.43	+1.7
3,993,971	+		PP_3520	0.45	+1.3
3,993,972	-		PP_3520	0.45	-0.3
3,994,004	+		PP_3520	0.50	-2.2
3,994,004	+		PP_3520	0.50	+0.3
3,994,005	-		PP_3520	0.50	+0.6
3,994,013	+		PP_3520	0.51	+0.1
3,994,014	-		PP_3520	0.51	-2.0