Strain Fitness in Pseudomonas putida KT2440 around PP_3515

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,986,552	+		PP_3514	0.47	-1.7
3,986,552	+		PP_3514	0.47	-2.1
3,986,552	+		PP_3514	0.47	+0.1
3,986,553	-		PP_3514	0.47	+0.6
3,986,568	-		PP_3514	0.48	+0.1
3,986,594	+		PP_3514	0.50	-0.4
3,986,594	+		PP_3514	0.50	-0.8
3,986,595	-		PP_3514	0.50	-1.4
3,986,595	-		PP_3514	0.50	+0.9
3,986,648	+		PP_3514	0.53	-0.5
3,986,649	-		PP_3514	0.53	-1.0
3,986,659	-		PP_3514	0.54	+0.9
3,986,683	+				+1.7
3,986,867	+		PP_3514	0.65	+0.3
3,986,867	+		PP_3514	0.65	-0.7
3,986,868	-		PP_3514	0.66	-1.8
3,986,980	+		PP_3514	0.72	+0.5
3,987,023	+		PP_3514	0.74	-1.6
3,987,240	-		PP_3514	0.87	+0.3
3,987,345	+				-1.3
3,987,496	-				+0.8
3,987,496	-				-0.7
3,987,816	+		PP_3515	0.16	-0.5
3,988,105	-		PP_3515	0.30	+1.2
3,988,161	+		PP_3515	0.33	+0.6
3,988,161	+		PP_3515	0.33	-1.0
3,988,161	+		PP_3515	0.33	-2.9
3,988,162	-		PP_3515	0.33	-0.4
3,988,162	-		PP_3515	0.33	-1.0
3,988,214	-		PP_3515	0.35	+0.8
3,988,218	+		PP_3515	0.35	+0.5
3,988,219	-		PP_3515	0.35	+1.4
3,988,219	-		PP_3515	0.35	-3.2
3,988,356	-		PP_3515	0.42	-0.1
3,988,629	+		PP_3515	0.55	+1.7
3,988,661	+		PP_3515	0.56	-1.5
3,988,968	+		PP_3515	0.71	+1.0
3,989,051	-		PP_3515	0.75	-0.3
3,989,115	+		PP_3515	0.78	-0.9
3,989,116	-		PP_3515	0.78	-3.1
3,989,116	-		PP_3515	0.78	+0.8
3,989,116	-		PP_3515	0.78	+0.3
3,989,133	+		PP_3515	0.79	+0.6
3,989,241	+		PP_3515	0.84	+2.8
3,989,242	-		PP_3515	0.84	+1.4
3,989,495	+				-1.2
3,989,496	-				+0.2
3,989,603	-				-1.4
3,989,638	+				-1.8
3,989,639	-				+0.3
3,989,644	-				+0.4
3,989,661	+				+0.4
3,989,662	-				-1.3
3,989,662	-				-2.4
3,989,765	+				-1.0
3,989,766	-				-2.3
3,989,794	+				-2.6
3,989,795	-				-1.4
3,989,795	-				-3.8
3,989,956	+		PP_3516	0.25	+0.1
3,989,956	+		PP_3516	0.25	+0.6
3,990,062	-		PP_3516	0.36	-0.3
3,990,151	+		PP_3516	0.45	+1.5
3,990,152	-		PP_3516	0.46	+1.0
3,990,374	-		PP_3516	0.69	+0.9
3,990,374	-		PP_3516	0.69	-2.7
3,990,478	+		PP_3516	0.80	+0.5
3,990,479	-		PP_3516	0.80	-0.5
3,990,486	+		PP_3516	0.80	-2.2