Strain Fitness in Pseudomonas putida KT2440 around PP_3509

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,981,354	+		PP_3508	0.67	+0.1
3,981,354	+		PP_3508	0.67	-0.4
3,981,355	-		PP_3508	0.68	-1.7
3,981,923	+				+2.7
3,981,923	+				+0.7
3,981,924	-				-1.5
3,981,924	-				+0.4
3,981,950	+				-1.1
3,981,950	+				-0.6
3,981,950	+				+0.8
3,981,950	+				-2.0
3,981,967	-				+0.3
3,982,073	+				-1.0
3,982,073	+				-0.9
3,982,127	+				+1.1
3,982,127	+				-2.6
3,982,128	-				-1.3
3,982,128	-				+0.7
3,982,142	+				-0.8
3,982,234	+		PP_3509	0.33	+1.4
3,982,234	+		PP_3509	0.33	+1.4
3,982,360	-		PP_3509	0.67	+1.3
3,982,360	-		PP_3509	0.67	+0.9
3,982,360	-		PP_3509	0.67	-2.4
3,982,634	+		PP_3510	0.42	+0.7
3,982,635	-		PP_3510	0.42	-0.2
3,982,635	-		PP_3510	0.42	-1.5
3,982,637	+				+0.7
3,982,637	+		PP_3510	0.43	-1.7
3,982,700	+		PP_3510	0.61	-1.1
3,982,701	-		PP_3510	0.61	-2.0
3,982,701	-				+2.3
3,982,701	-		PP_3510	0.61	+0.2
3,982,701	-		PP_3510	0.61	+0.1
3,982,701	-		PP_3510	0.61	-0.6
3,982,701	-		PP_3510	0.61	-0.6
3,982,768	+		PP_3510	0.79	-1.2
3,982,768	+		PP_3510	0.79	-2.8
3,982,768	+		PP_3510	0.79	+1.2
3,982,768	+		PP_3510	0.79	+0.3
3,982,769	-		PP_3510	0.80	-2.5
3,982,769	-		PP_3510	0.80	-1.5
3,982,769	-		PP_3510	0.80	+0.6
3,982,769	-		PP_3510	0.80	-0.7
3,982,769	-		PP_3510	0.80	+0.2
3,982,769	-		PP_3510	0.80	-0.7
3,982,769	-		PP_3510	0.80	+0.5
3,982,774	-		PP_3510	0.81	-0.6
3,982,774	-		PP_3510	0.81	+0.3
3,982,774	-		PP_3510	0.81	-0.1
3,982,774	-		PP_3510	0.81	-0.6
3,982,774	-		PP_3510	0.81	-0.2
3,982,859	-				+0.5
3,982,859	-				-1.3
3,982,859	-				+0.5
3,982,861	+				-1.7
3,982,862	-				-2.4
3,982,862	-				+0.5
3,982,916	+				-2.9
3,982,916	+				-0.1
3,982,916	+				+0.6
3,982,916	+				+2.3
3,982,917	-				+0.7
3,982,917	-				-2.7
3,982,917	-				-0.9
3,982,917	-				-1.7
3,982,917	-				-3.0
3,982,919	+				+1.1
3,982,919	+				+1.8
3,982,919	+				+2.1
3,982,919	+				+1.7
3,982,919	+				+0.7
3,982,919	+				+0.2
3,982,920	-				+0.7
3,982,920	-				+1.3
3,982,920	-				+1.3
3,982,938	+				+0.3
3,982,938	+				-2.4
3,982,938	+				-0.1
3,982,939	-				-1.3
3,982,939	-				-1.0
3,982,940	+				+0.7
3,982,940	+				-1.6
3,982,941	-				-2.5
3,983,005	-				-0.2
3,983,030	-				-2.9
3,983,050	+				-0.3
3,983,051	-				-1.5
3,983,108	+		PP_3511	0.12	-1.5
3,983,108	+		PP_3511	0.12	-1.4
3,983,108	+		PP_3511	0.12	+0.1
3,983,108	+		PP_3511	0.12	+0.9
3,983,109	-		PP_3511	0.12	+0.9
3,983,109	-		PP_3511	0.12	-0.2
3,983,109	-		PP_3511	0.12	-2.7
3,983,109	-		PP_3511	0.12	+0.6
3,983,357	-		PP_3511	0.36	-0.6
3,983,452	+		PP_3511	0.46	-0.2