Strain Fitness in Pseudomonas putida KT2440 around PP_3503

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,973,102	+				-0.9
3,973,112	+				-2.4
3,973,178	+				+0.7
3,973,283	+		PP_3503	0.10	-1.3
3,973,283	+		PP_3503	0.10	-0.3
3,973,284	-		PP_3503	0.10	-1.0
3,973,284	-		PP_3503	0.10	-0.3
3,973,284	-		PP_3503	0.10	-2.8
3,973,284	-		PP_3503	0.10	-1.9
3,973,583	+		PP_3503	0.33	-0.1
3,973,584	-		PP_3503	0.33	-3.0
3,973,587	-		PP_3503	0.33	-2.4
3,973,587	-		PP_3503	0.33	-3.0
3,973,658	-		PP_3503	0.39	-2.2
3,973,658	-		PP_3503	0.39	-1.9
3,973,658	-		PP_3503	0.39	+1.0
3,974,137	+		PP_3503	0.75	+0.2
3,974,137	+		PP_3503	0.75	-1.2
3,974,138	-		PP_3503	0.75	-0.5
3,974,324	-		PP_3503	0.89	+0.8
3,974,364	+				-1.3
3,974,364	+				-0.3
3,974,365	-				-0.9
3,974,365	-				-0.1
3,974,405	-				-1.1
3,974,541	+				+0.2
3,974,541	+				-2.2
3,974,694	+				+1.0
3,974,694	+				+1.7
3,974,717	+				+0.5
3,974,717	+				+1.7
3,974,718	-				-1.3
3,974,723	+				-0.9
3,974,799	-				-0.9
3,974,799	-				-1.1
3,974,884	-		PP_3504	0.27	+0.8
3,974,905	+		PP_3504	0.34	-0.4
3,974,905	+		PP_3504	0.34	-3.0
3,974,981	+		PP_3504	0.63	+0.3
3,974,981	+		PP_3504	0.63	-2.2
3,974,981	+		PP_3504	0.63	-0.9
3,974,982	-		PP_3504	0.63	-0.6
3,974,982	-		PP_3504	0.63	+0.2
3,974,982	-		PP_3504	0.63	+0.2
3,975,077	+				-3.6
3,975,078	-				-2.7
3,975,078	-				-2.3
3,975,121	+				-2.2
3,975,121	+				-0.9
3,975,121	+				-1.8
3,975,220	+				+2.0
3,975,221	-				-2.4
3,975,221	-				+1.7
3,975,324	-		PP_3505	0.23	+1.4
3,975,403	-		PP_3505	0.37	-2.8