Strain Fitness in Pseudomonas putida KT2440 around PP_3495

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,963,414	+		PP_3493	0.37	-1.6
3,963,415	-		PP_3493	0.37	+4.0
3,963,424	-		PP_3493	0.38	-3.0
3,963,473	+		PP_3493	0.43	-2.3
3,963,667	-		PP_3493	0.64	-1.5
3,963,739	+		PP_3493	0.72	-2.4
3,963,740	-		PP_3493	0.72	-1.7
3,963,740	-				+1.7
3,963,923	-				-0.1
3,963,979	+				+0.5
3,964,088	-				-0.6
3,964,096	-				+0.6
3,964,107	-				+0.1
3,964,153	-		PP_3494	0.11	-0.9
3,964,220	-		PP_3494	0.37	-2.8
3,964,220	-		PP_3494	0.37	+1.4
3,964,225	+		PP_3494	0.39	+1.1
3,964,225	+		PP_3494	0.39	+1.5
3,964,226	-		PP_3494	0.39	-2.6
3,964,315	+		PP_3494	0.74	-3.5
3,964,315	+		PP_3494	0.74	-2.6
3,964,315	+		PP_3494	0.74	+0.5
3,964,315	+		PP_3494	0.74	+0.4
3,964,315	+		PP_3494	0.74	-2.7
3,964,315	+		PP_3494	0.74	+0.1
3,964,316	-		PP_3494	0.74	+1.9
3,964,316	-		PP_3494	0.74	-0.2
3,964,316	-		PP_3494	0.74	-2.4
3,964,316	-		PP_3494	0.74	-2.2
3,964,563	+		PP_3495	0.26	-0.0
3,964,564	-		PP_3495	0.26	-1.9
3,964,581	+		PP_3495	0.28	-0.4
3,964,581	+		PP_3495	0.28	-1.6
3,964,581	+		PP_3495	0.28	-2.0
3,964,582	-		PP_3495	0.28	-1.5
3,964,582	-		PP_3495	0.28	+0.0
3,964,582	-		PP_3495	0.28	-0.3
3,964,582	-		PP_3495	0.28	-2.0
3,964,813	+		PP_3495	0.62	-0.6
3,964,862	+		PP_3495	0.69	-3.4
3,964,952	+		PP_3495	0.82	-0.3
3,965,027	+				-2.7
3,965,027	+				+0.4
3,965,028	-				+0.5
3,965,028	-				-0.9
3,965,028	-				-0.4
3,965,028	-				-0.3
3,965,028	-				+1.5
3,965,028	-				-1.0
3,965,080	+				-0.3
3,965,080	+				-2.7
3,965,081	-				-2.1
3,965,235	+				+0.3
3,965,235	+				-1.1
3,965,236	-		PP_3496	0.10	-1.3
3,965,236	-		PP_3496	0.10	-0.2
3,965,442	+		PP_3496	0.62	-0.5
3,965,442	+		PP_3496	0.62	-1.5
3,965,442	+		PP_3496	0.62	+1.6
3,965,443	-		PP_3496	0.62	-2.1
3,965,443	-		PP_3496	0.62	-2.0
3,965,485	-		PP_3496	0.72	-0.8
3,965,681	+				+0.4
3,965,765	+				+0.8
3,965,778	+				+1.4
3,965,779	-				-1.3
3,965,800	-				-1.6
3,965,800	-				-3.3
3,965,802	-				-1.2
3,965,901	+				-1.9
3,965,901	+				-1.6
3,965,901	+				+1.7
3,965,902	-				+0.1
3,965,902	-				-0.5
3,965,902	-				-1.0
3,965,902	-				+1.7
3,965,902	-				-2.6
3,965,902	-				+0.6
3,965,988	+				-0.2
3,965,989	-				+0.8
3,965,989	-				-1.9
3,966,072	+		PP_3497	0.13	+0.3
3,966,072	+		PP_3497	0.13	+0.4
3,966,073	-		PP_3497	0.13	+1.6
3,966,073	-		PP_3497	0.13	+0.2