Strain Fitness in Pseudomonas putida KT2440 around PP_3493

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,962,084	-		PP_3492	0.24	-0.1
3,962,106	+		PP_3492	0.26	-1.8
3,962,107	-		PP_3492	0.26	+0.0
3,962,611	+		PP_3492	0.70	-2.3
3,962,832	+		PP_3492	0.89	-2.1
3,962,833	-		PP_3492	0.89	-0.8
3,962,860	-				+0.3
3,962,862	+				-1.1
3,962,889	+				+0.4
3,962,889	+				+0.4
3,962,889	+				-0.2
3,962,889	+				-0.2
3,962,890	-				-2.5
3,962,890	-				-3.4
3,962,890	-				+0.0
3,962,890	-				-0.7
3,962,944	-				+1.0
3,963,144	+				-0.0
3,963,145	-				+1.4
3,963,177	+		PP_3493	0.11	+0.6
3,963,193	-		PP_3493	0.13	-0.9
3,963,193	-		PP_3493	0.13	+0.1
3,963,201	+		PP_3493	0.14	-2.9
3,963,201	+		PP_3493	0.14	-2.5
3,963,201	+		PP_3493	0.14	-1.3
3,963,202	-		PP_3493	0.14	-0.1
3,963,202	-		PP_3493	0.14	+0.8
3,963,279	+		PP_3493	0.22	-3.3
3,963,280	-		PP_3493	0.22	+0.8
3,963,280	-		PP_3493	0.22	-1.8
3,963,280	-		PP_3493	0.22	+0.2
3,963,414	+		PP_3493	0.37	-1.6
3,963,415	-		PP_3493	0.37	+4.0
3,963,424	-		PP_3493	0.38	-3.0
3,963,473	+		PP_3493	0.43	-2.3
3,963,667	-		PP_3493	0.64	-1.5
3,963,739	+		PP_3493	0.72	-2.4
3,963,740	-		PP_3493	0.72	-1.7
3,963,740	-				+1.7
3,963,923	-				-0.1
3,963,979	+				+0.5
3,964,088	-				-0.6
3,964,096	-				+0.6
3,964,107	-				+0.1
3,964,153	-		PP_3494	0.11	-0.9
3,964,220	-		PP_3494	0.37	-2.8
3,964,220	-		PP_3494	0.37	+1.4
3,964,225	+		PP_3494	0.39	+1.1
3,964,225	+		PP_3494	0.39	+1.5
3,964,226	-		PP_3494	0.39	-2.6
3,964,315	+		PP_3494	0.74	-3.5
3,964,315	+		PP_3494	0.74	-2.6
3,964,315	+		PP_3494	0.74	+0.5
3,964,315	+		PP_3494	0.74	+0.4
3,964,315	+		PP_3494	0.74	-2.7
3,964,315	+		PP_3494	0.74	+0.1
3,964,316	-		PP_3494	0.74	+1.9
3,964,316	-		PP_3494	0.74	-0.2
3,964,316	-		PP_3494	0.74	-2.4
3,964,316	-		PP_3494	0.74	-2.2
3,964,563	+		PP_3495	0.26	-0.0
3,964,564	-		PP_3495	0.26	-1.9
3,964,581	+		PP_3495	0.28	-0.4
3,964,581	+		PP_3495	0.28	-1.6
3,964,581	+		PP_3495	0.28	-2.0
3,964,582	-		PP_3495	0.28	-1.5
3,964,582	-		PP_3495	0.28	+0.0
3,964,582	-		PP_3495	0.28	-0.3
3,964,582	-		PP_3495	0.28	-2.0
3,964,813	+		PP_3495	0.62	-0.6
3,964,862	+		PP_3495	0.69	-3.4
3,964,952	+		PP_3495	0.82	-0.3