Strain Fitness in Pseudomonas putida KT2440 around PP_3485

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,947,941	+				-0.1
3,947,942	-				+0.1
3,947,942	-				-0.6
3,947,965	+				-2.5
3,947,965	+				-0.6
3,947,965	+				-0.6
3,947,965	+				-1.5
3,947,965	+				-0.5
3,947,965	+				+0.7
3,947,965	+				-0.9
3,947,965	+				-2.3
3,947,966	-				-0.7
3,947,966	-				-0.4
3,947,966	-				-0.5
3,947,966	-				-1.3
3,947,966	-				-2.5
3,948,197	+		PP_3484	0.17	+1.3
3,948,197	+		PP_3484	0.17	-2.5
3,948,198	-		PP_3484	0.17	-2.4
3,948,198	-		PP_3484	0.17	+1.3
3,948,483	-		PP_3484	0.70	+2.7
3,948,496	+		PP_3484	0.73	+1.7
3,948,497	-		PP_3484	0.73	-3.2
3,948,581	+		PP_3484	0.89	-1.2
3,948,581	+		PP_3484	0.89	+0.1
3,948,582	-		PP_3484	0.89	-2.2
3,948,582	-		PP_3484	0.89	-1.6
3,948,622	+				-2.8
3,948,628	+				-2.6
3,948,629	-				+0.5
3,948,629	-				-2.7
3,948,629	-				+1.1
3,948,629	-				+0.8
3,948,658	-				-2.0
3,948,729	-				-2.7
3,948,747	+				+1.7
3,948,843	-				-1.7
3,949,009	+		PP_3485	0.18	-1.9
3,949,124	+				+2.7
3,949,124	+		PP_3485	0.36	+0.4
3,949,125	-		PP_3485	0.36	-2.5
3,949,125	-		PP_3485	0.36	-3.1
3,949,125	-		PP_3485	0.36	+1.3
3,949,157	+		PP_3485	0.41	+0.7
3,949,158	-		PP_3485	0.41	-1.1
3,949,158	-		PP_3485	0.41	+0.5
3,949,210	+		PP_3485	0.50	+0.7
3,949,281	+		PP_3485	0.61	+1.1
3,949,281	+		PP_3485	0.61	-1.1
3,949,356	+		PP_3485	0.72	-2.8
3,949,356	+		PP_3485	0.72	+0.6
3,949,356	+		PP_3485	0.72	-3.3
3,949,356	+		PP_3485	0.72	-0.9
3,949,357	-		PP_3485	0.72	-0.7
3,949,358	+		PP_3485	0.73	-2.3
3,949,410	-		PP_3485	0.81	-2.0
3,949,421	+				-0.3
3,949,422	-		PP_3485	0.83	-1.1
3,949,587	+				-1.7
3,949,788	+		PP_3486	0.16	-1.5
3,949,788	+		PP_3486	0.16	-1.5
3,949,789	-		PP_3486	0.16	-1.9
3,949,789	-		PP_3486	0.16	+0.7
3,949,789	-		PP_3486	0.16	+1.0
3,949,886	+		PP_3486	0.23	-0.4
3,949,949	-		PP_3486	0.27	+1.4
3,949,973	+		PP_3486	0.29	-2.8
3,949,973	+		PP_3486	0.29	+1.7
3,949,974	-		PP_3486	0.29	-0.8
3,950,162	+		PP_3486	0.41	-1.5
3,950,162	+		PP_3486	0.41	+1.4
3,950,163	-		PP_3486	0.41	-1.3
3,950,188	+		PP_3486	0.43	-1.1
3,950,444	-		PP_3486	0.60	-1.1
3,950,446	+		PP_3486	0.60	+1.1
3,950,447	-		PP_3486	0.60	-1.6