Strain Fitness in Pseudomonas putida KT2440 around PP_3478

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,941,031	-		PP_3475	0.68	-0.6
3,941,150	+				+0.0
3,941,150	+				-2.1
3,941,150	+				+0.3
3,941,151	-				-0.4
3,941,151	-				+0.1
3,941,154	+				-3.0
3,941,172	+				-3.0
3,941,172	+				+2.3
3,941,172	+				+0.2
3,941,173	-				+0.7
3,941,173	-				+0.9
3,941,322	+		PP_3476	0.39	-1.7
3,941,376	+		PP_3476	0.53	+0.7
3,941,376	+		PP_3476	0.53	-1.7
3,941,376	+		PP_3476	0.53	+0.3
3,941,376	+		PP_3476	0.53	+0.6
3,941,376	+		PP_3476	0.53	-2.7
3,941,377	-		PP_3476	0.53	+1.7
3,941,380	-		PP_3476	0.54	-0.8
3,941,458	-				+1.7
3,941,603	+		PP_3477	0.11	-2.7
3,941,603	+		PP_3477	0.11	+0.5
3,941,733	-		PP_3477	0.38	-3.2
3,941,733	-		PP_3477	0.38	+0.2
3,941,776	+		PP_3477	0.47	-1.9
3,941,811	+		PP_3477	0.54	-2.7
3,941,855	+		PP_3477	0.63	+0.5
3,941,882	+		PP_3477	0.69	+1.3
3,941,883	-		PP_3477	0.69	+1.5
3,941,920	+		PP_3477	0.77	-2.8
3,941,921	-		PP_3477	0.77	-0.6
3,942,104	+				-0.4
3,942,532	-		PP_3478	0.27	-2.2
3,942,553	+		PP_3478	0.28	+0.8
3,942,554	-		PP_3478	0.28	+0.1
3,943,061	-		PP_3478	0.55	-1.4
3,943,061	-		PP_3478	0.55	+1.0
3,943,088	-		PP_3478	0.57	-0.8
3,943,459	+		PP_3478	0.77	-2.2
3,943,460	-		PP_3478	0.77	-1.7
3,943,460	-		PP_3478	0.77	-2.2
3,943,512	+		PP_3478	0.80	-1.3
3,943,604	-		PP_3478	0.85	-0.8
3,943,716	-				-0.4
3,943,768	+				+0.1
3,943,769	-				+0.9
3,943,769	-				-2.9
3,943,939	-				+0.5
3,943,939	-				-0.6
3,943,980	+		PP_5605	0.18	-0.1
3,943,980	+		PP_5605	0.18	+0.6
3,943,980	+		PP_5605	0.18	-1.4
3,943,981	-		PP_5605	0.18	-1.7
3,943,981	-		PP_5605	0.18	-0.2
3,944,243	+		PP_5605	0.70	+0.0
3,944,243	+		PP_5605	0.70	-1.1
3,944,243	+		PP_5605	0.70	-2.7
3,944,243	+		PP_5605	0.70	-1.4
3,944,244	-		PP_5605	0.70	-2.2
3,944,269	+		PP_5605	0.75	+0.7
3,944,269	+		PP_5605	0.75	-2.4
3,944,270	-		PP_5605	0.75	-2.1
3,944,412	-				-0.5
3,944,412	-				-0.5
3,944,412	-				-3.2
3,944,520	+		PP_3480	0.22	+0.6
3,944,520	+		PP_3480	0.22	-2.9
3,944,521	-		PP_3480	0.22	-0.0
3,944,610	-		PP_3480	0.38	-0.3
3,944,773	+		PP_3480	0.67	+0.1