Strain Fitness in Pseudomonas putida KT2440 around PP_3471

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,937,047	+		PP_3469	0.86	+1.1
3,937,102	-				-1.1
3,937,203	-				+1.0
3,937,358	-				-1.4
3,937,478	+				-1.3
3,937,478	+				-1.9
3,937,479	-				+0.1
3,937,479	-				+1.3
3,937,509	+				+0.8
3,937,706	+				+0.3
3,937,707	-				-0.6
3,937,707	-				-1.6
3,937,814	-				+0.8
3,937,908	+				-3.0
3,937,961	+				-2.4
3,938,009	-				+1.1
3,938,160	-		PP_3471	0.20	-0.9
3,938,192	-		PP_3471	0.24	-1.3
3,938,192	-		PP_3471	0.24	-1.0
3,938,411	+		PP_3471	0.52	-1.6
3,938,621	+		PP_3471	0.78	-1.9
3,938,657	+				+0.7
3,938,657	+		PP_3471	0.82	+0.4
3,938,726	-				-1.7
3,938,823	+				-0.3
3,938,968	+				-0.4
3,939,142	+		PP_3472	0.19	-0.9
3,939,142	+		PP_3472	0.19	-2.1
3,939,142	+		PP_3472	0.19	-2.8
3,939,142	+		PP_3472	0.19	-1.8
3,939,143	-		PP_3472	0.19	+0.7
3,939,143	-		PP_3472	0.19	+0.3
3,939,143	-		PP_3472	0.19	-1.3
3,939,143	-		PP_3472	0.19	-0.0
3,939,144	+		PP_3472	0.20	-0.1
3,939,145	-		PP_3472	0.20	-2.1
3,939,217	-		PP_3472	0.28	-2.5
3,939,217	-		PP_3472	0.28	-1.8
3,939,372	+		PP_3472	0.46	-1.7
3,939,447	-				-0.3
3,939,618	+		PP_3472	0.75	-1.3
3,939,618	+		PP_3472	0.75	-2.5
3,939,619	-		PP_3472	0.76	+0.7
3,939,645	+		PP_3472	0.79	-1.1
3,939,645	+		PP_3472	0.79	+1.7
3,939,646	-		PP_3472	0.79	+0.8
3,939,696	+		PP_3472	0.85	-0.5
3,939,696	+		PP_3472	0.85	+0.3
3,939,696	+		PP_3472	0.85	-1.1
3,939,696	+		PP_3472	0.85	-2.4
3,939,697	-		PP_3472	0.85	-2.4
3,939,700	-		PP_3472	0.85	-2.4
3,939,700	-		PP_3472	0.85	-2.5