Strain Fitness in Pseudomonas putida KT2440 around PP_3430

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,884,844	+		PP_3429	0.45	-0.0
3,884,844	+				+1.7
3,884,847	-		PP_3429	0.45	-2.0
3,884,847	-				+1.7
3,884,847	-		PP_3429	0.45	+0.1
3,884,856	+		PP_3429	0.46	-3.0
3,884,856	+		PP_3429	0.46	-0.0
3,884,857	-		PP_3429	0.46	-3.3
3,885,097	+		PP_3429	0.61	+1.7
3,885,098	-		PP_3429	0.61	-3.7
3,885,223	+		PP_3429	0.68	-0.5
3,885,224	-		PP_3429	0.69	+0.7
3,885,224	-		PP_3429	0.69	-0.8
3,885,252	+		PP_3429	0.70	+1.8
3,885,252	+		PP_3429	0.70	-2.7
3,885,252	+				+0.7
3,885,253	-		PP_3429	0.70	-0.8
3,885,253	-		PP_3429	0.70	-3.1
3,885,298	+		PP_3429	0.73	-0.4
3,885,298	+				+1.7
3,885,332	-		PP_3429	0.75	-2.2
3,885,719	+				+0.8
3,885,719	+				-3.7
3,885,719	+				-0.6
3,885,719	+				+0.1
3,885,723	+				-0.0
3,885,741	-				+1.3
3,886,046	+		PP_3430	0.14	+0.6
3,886,223	+		PP_3430	0.23	+0.6
3,886,250	+				-0.3
3,886,250	+		PP_3430	0.24	+2.1
3,886,250	+		PP_3430	0.24	-1.4
3,886,251	-		PP_3430	0.24	-1.7
3,886,251	-		PP_3430	0.24	-0.3
3,886,251	-		PP_3430	0.24	+1.6
3,886,301	+		PP_3430	0.27	+0.1
3,886,376	+		PP_3430	0.30	+0.2
3,886,376	+		PP_3430	0.30	-1.8
3,886,376	+		PP_3430	0.30	-2.3
3,886,377	-		PP_3430	0.30	+1.4
3,886,511	-		PP_3430	0.36	+1.0
3,886,615	+				+0.2
3,886,615	+		PP_3430	0.41	+2.3
3,886,615	+		PP_3430	0.41	+0.4
3,886,616	-		PP_3430	0.41	-2.0
3,886,730	+		PP_3430	0.47	-2.0
3,886,730	+		PP_3430	0.47	-0.4
3,886,731	-		PP_3430	0.47	+1.5
3,886,731	-		PP_3430	0.47	-0.6
3,886,861	-		PP_3430	0.53	-0.1
3,886,861	-		PP_3430	0.53	+0.8
3,886,985	+		PP_3430	0.59	-2.1
3,886,986	-		PP_3430	0.59	-0.8
3,886,986	-		PP_3430	0.59	-1.8
3,887,065	+		PP_3430	0.63	+0.6
3,887,329	-		PP_3430	0.75	-0.5
3,887,375	+		PP_3430	0.77	-1.3
3,887,393	-		PP_3430	0.78	+1.0
3,887,421	+		PP_3430	0.79	-0.9
3,887,499	+		PP_3430	0.83	-0.6
3,887,500	-		PP_3430	0.83	+0.7
3,887,500	-		PP_3430	0.83	-1.1
3,887,571	+		PP_3430	0.86	+1.7
3,887,571	+		PP_3430	0.86	+1.2
3,887,571	+		PP_3430	0.86	+0.4
3,887,572	-		PP_3430	0.87	+1.7
3,887,572	-		PP_3430	0.87	-0.8
3,887,689	-				-1.0
3,887,881	+				+1.6
3,887,881	+				-1.1
3,887,927	+				+0.5
3,887,927	+				-0.4
3,887,927	+				-2.2
3,887,927	+				+0.6
3,887,927	+				+0.9
3,887,927	+				+1.4
3,887,927	+				+1.3
3,887,928	-				-0.3
3,887,928	-				-0.8
3,887,928	-				-1.4
3,887,932	+				-0.5
3,887,932	+				-2.4
3,887,932	+				+0.7
3,887,933	-				+0.5
3,887,933	-				-0.2
3,887,937	-				-1.9
3,887,937	-				+1.1
3,888,028	+				-1.3
3,888,028	+				-0.4
3,888,028	+				+2.0
3,888,038	+				+0.3
3,888,038	+				-0.6
3,888,039	-				+0.9
3,888,117	-		PP_3431	0.18	+1.6
3,888,128	+		PP_3431	0.19	+1.6
3,888,128	+		PP_3431	0.19	-2.4
3,888,128	+		PP_3431	0.19	+3.7
3,888,241	+		PP_3431	0.36	+1.5
3,888,242	-		PP_3431	0.36	+0.2
3,888,242	-		PP_3431	0.36	-1.4
3,888,276	-		PP_3431	0.41	-1.0
3,888,276	-		PP_3431	0.41	+0.1
3,888,276	-		PP_3431	0.41	+0.5
3,888,287	+		PP_3431	0.42	+0.3
3,888,288	-		PP_3431	0.43	-0.9
3,888,288	-		PP_3431	0.43	+1.9
3,888,290	+		PP_3431	0.43	-0.7
3,888,291	-		PP_3431	0.43	+1.0
3,888,315	-		PP_3431	0.46	+0.1
3,888,315	-		PP_3431	0.46	-0.4
3,888,402	+		PP_3431	0.59	-1.7
3,888,430	+		PP_3431	0.63	+0.2
3,888,480	+		PP_3431	0.70	+0.8
3,888,480	+		PP_3431	0.70	-1.3
3,888,510	+		PP_3431	0.75	+0.7
3,888,510	+		PP_3431	0.75	+0.4
3,888,511	-		PP_3431	0.75	+0.2
3,888,511	-		PP_3431	0.75	-0.4
3,888,511	-		PP_3431	0.75	-0.5
3,888,511	-		PP_3431	0.75	-1.2
3,888,558	-				+1.7
3,888,588	-		PP_3431	0.86	+1.7
3,888,588	-		PP_3431	0.86	+1.0
3,888,680	+				-0.6
3,888,680	+				+0.1
3,888,684	+				-2.6
3,888,730	-				+1.0
3,888,750	+				+0.2
3,888,751	-				-2.6
3,888,751	-				+0.2
3,888,754	+				+0.7
3,888,754	+				-0.4
3,888,755	-				-0.0
3,888,755	-				-0.3
3,888,803	+				-0.7
3,888,803	+				-0.3
3,888,803	+				-0.4
3,888,803	+				+0.4
3,888,803	+				+0.7
3,888,804	-				-2.1
3,888,804	-				+0.2
3,888,804	-				+0.9
3,888,806	+				+0.2
3,888,806	+				-0.6
3,888,811	+				+2.9
3,888,811	+				-0.7
3,888,811	+				-0.8
3,888,811	+				-1.3
3,888,812	-				-3.1
3,888,812	-				-0.2
3,888,812	-				+0.4
3,888,812	-				-1.8