Strain Fitness in Pseudomonas putida KT2440 around PP_3395

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,844,794	+				-0.2
3,844,794	+				-0.7
3,844,795	-				-1.0
3,844,795	-				+1.8
3,844,797	+		PP_3394	0.10	-0.6
3,844,797	+		PP_3394	0.10	-2.8
3,844,798	-		PP_3394	0.10	-1.8
3,844,798	-		PP_3394	0.10	-1.6
3,844,816	-		PP_3394	0.12	-0.9
3,844,886	+		PP_3394	0.20	+1.2
3,844,887	-		PP_3394	0.20	+0.3
3,844,887	-		PP_3394	0.20	-1.0
3,844,887	-		PP_3394	0.20	+2.0
3,845,089	+		PP_3394	0.41	-1.2
3,845,249	+		PP_3394	0.59	-1.9
3,845,412	+		PP_3394	0.76	-0.7
3,845,623	-				-1.2
3,845,623	-				+1.1
3,845,623	-				+1.8
3,845,667	+				+1.8
3,845,667	+				-1.8
3,845,668	-				+0.5
3,845,952	-		PP_3395	0.23	+0.9
3,845,952	-		PP_3395	0.23	+1.3
3,845,975	+		PP_3395	0.25	+0.2
3,845,975	+		PP_3395	0.25	-0.8
3,845,976	-		PP_3395	0.25	-1.8
3,845,976	-		PP_3395	0.25	+0.5
3,845,976	-		PP_3395	0.25	-0.9
3,846,068	+		PP_3395	0.35	+1.1
3,846,201	+		PP_3395	0.49	+0.7
3,846,201	+		PP_3395	0.49	+0.8
3,846,201	+		PP_3395	0.49	+0.7
3,846,285	-		PP_3395	0.57	+0.1
3,846,337	+		PP_3395	0.63	-0.3
3,846,337	+		PP_3395	0.63	+0.9
3,846,338	-		PP_3395	0.63	-0.2
3,846,338	-		PP_3395	0.63	+1.2
3,846,381	-		PP_3395	0.67	-1.3
3,846,381	-		PP_3395	0.67	+1.1
3,846,534	+		PP_3395	0.83	-1.7
3,846,535	-		PP_3395	0.83	+3.4
3,846,535	-		PP_3395	0.83	-1.8
3,846,535	-		PP_3395	0.83	-0.6
3,846,777	+				-1.5
3,846,778	-				+0.3
3,846,785	+				+0.8
3,846,786	-				-0.2
3,846,786	-				+1.1
3,846,812	+				-0.2
3,846,813	-				+1.8
3,847,010	+				+0.6
3,847,010	+				-1.0
3,847,010	+				-2.6
3,847,011	-				-0.5
3,847,011	-				-0.5
3,847,011	-				-2.8
3,847,011	-				+0.6
3,847,130	+		PP_3396	0.16	+0.8
3,847,130	+		PP_3396	0.16	+0.5
3,847,130	+		PP_3396	0.16	+2.0
3,847,130	+		PP_3396	0.16	+0.1
3,847,130	+		PP_3396	0.16	-2.7
3,847,130	+		PP_3396	0.16	-1.9
3,847,131	-		PP_3396	0.17	-2.8
3,847,131	-		PP_3396	0.17	+0.2
3,847,131	-		PP_3396	0.17	-0.2
3,847,131	-		PP_3396	0.17	-1.6
3,847,131	-		PP_3396	0.17	-1.3
3,847,143	+		PP_3396	0.17	-0.6
3,847,144	-		PP_3396	0.18	-1.9
3,847,271	+		PP_3396	0.27	-1.5
3,847,271	+		PP_3396	0.27	-2.3
3,847,272	-		PP_3396	0.27	+2.2
3,847,272	-		PP_3396	0.27	-3.7
3,847,379	+		PP_3396	0.35	-1.1
3,847,379	+		PP_3396	0.35	-0.0
3,847,379	+		PP_3396	0.35	+0.9
3,847,379	+		PP_3396	0.35	-1.3
3,847,380	-		PP_3396	0.35	+1.3
3,847,380	-		PP_3396	0.35	-1.9
3,847,380	-		PP_3396	0.35	-0.2
3,847,380	-		PP_3396	0.35	-0.1
3,847,397	+		PP_3396	0.37	-0.8
3,847,398	-		PP_3396	0.37	+2.2
3,847,619	+		PP_3396	0.53	+1.1
3,847,619	+		PP_3396	0.53	-1.6
3,847,619	+		PP_3396	0.53	-0.4
3,847,620	-		PP_3396	0.53	-0.5
3,847,620	-		PP_3396	0.53	+0.7