Strain Fitness in Pseudomonas putida KT2440 around PP_3386

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,832,585	+		PP_3385	0.13	+0.4
3,832,606	+		PP_3385	0.16	-1.2
3,832,607	-		PP_3385	0.16	+0.4
3,832,761	+		PP_3385	0.34	+1.9
3,832,764	+		PP_3385	0.34	-0.8
3,832,765	-		PP_3385	0.34	+1.3
3,832,793	-		PP_3385	0.38	-2.9
3,832,816	+		PP_3385	0.40	-0.4
3,832,817	-		PP_3385	0.40	-2.2
3,833,041	+		PP_3385	0.67	-2.5
3,833,041	+				+0.9
3,833,041	+		PP_3385	0.67	+0.8
3,833,041	+		PP_3385	0.67	+0.8
3,833,151	+		PP_3385	0.80	-1.6
3,833,151	+		PP_3385	0.80	-0.2
3,833,151	+		PP_3385	0.80	-0.2
3,833,152	-		PP_3385	0.80	-0.8
3,833,152	-		PP_3385	0.80	-0.5
3,833,178	+		PP_3385	0.83	+3.4
3,833,178	+		PP_3385	0.83	-0.4
3,833,179	-		PP_3385	0.83	+0.3
3,833,245	+				+0.5
3,833,251	+				-0.4
3,833,251	+				-0.3
3,833,251	+				+1.3
3,833,252	-				-0.1
3,833,254	+				+2.3
3,833,254	+				-1.2
3,833,254	+				-1.7
3,833,255	-				+0.6
3,833,255	-				+0.3
3,833,255	-				+0.4
3,833,260	+				-1.7
3,833,276	+				+1.3
3,833,320	+				-1.1
3,833,445	+				-2.5
3,833,445	+				-2.6
3,833,547	-				+1.7
3,833,837	+		PP_3386	0.23	-0.9
3,833,872	-		PP_3386	0.25	+1.4
3,833,985	-		PP_3386	0.30	-1.9
3,833,985	-		PP_3386	0.30	+1.0
3,834,080	+		PP_3386	0.34	+1.8
3,834,081	-		PP_3386	0.34	+2.1
3,834,081	-		PP_3386	0.34	+0.2
3,834,101	+		PP_3386	0.35	+1.0
3,834,122	+		PP_3386	0.36	+2.1
3,834,122	+		PP_3386	0.36	-0.1
3,834,130	+		PP_3386	0.36	+0.7
3,834,130	+		PP_3386	0.36	-0.1
3,834,131	-		PP_3386	0.37	+0.2
3,834,131	-		PP_3386	0.37	+0.6
3,834,131	-		PP_3386	0.37	+1.1
3,834,131	-		PP_3386	0.37	+0.1
3,834,131	-		PP_3386	0.37	+1.1
3,834,131	-		PP_3386	0.37	-0.1
3,834,155	+		PP_3386	0.38	-0.2
3,834,156	-		PP_3386	0.38	-2.4
3,834,545	+		PP_3386	0.56	+1.9
3,834,707	+		PP_3386	0.63	+1.9
3,834,708	-		PP_3386	0.63	-2.1
3,834,708	-		PP_3386	0.63	-3.0
3,834,753	-		PP_3386	0.65	+0.4
3,834,753	-		PP_3386	0.65	-2.4
3,834,776	+		PP_3386	0.66	+0.3
3,834,777	-		PP_3386	0.66	-0.1
3,834,826	+		PP_3386	0.68	+1.1
3,835,134	+		PP_3386	0.83	+0.4
3,835,263	-		PP_3386	0.88	-2.1
3,835,335	+				+0.6
3,835,336	-				+2.5
3,835,336	-				+0.6
3,835,387	+				-1.2
3,835,568	-				+0.1
3,835,879	+		PP_3387	0.42	+2.0
3,835,879	+		PP_3387	0.42	+1.1
3,835,913	+		PP_3387	0.46	+2.5
3,835,913	+		PP_3387	0.46	-0.4
3,835,914	-		PP_3387	0.46	-2.1
3,836,203	+		PP_3387	0.78	+0.2
3,836,204	-		PP_3387	0.79	-1.4
3,836,204	-		PP_3387	0.79	-2.2
3,836,257	+		PP_3387	0.85	+1.1
3,836,258	-		PP_3387	0.85	+0.2
3,836,295	+		PP_3387	0.89	+2.2
3,836,296	-		PP_3387	0.89	+0.6
3,836,435	-				+1.7
3,836,435	-				-1.5