Strain Fitness in Pseudomonas putida KT2440 around PP_3346

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,783,073	+		PP_3345	0.21	-0.4
3,783,718	+				-2.8
3,783,718	+				-1.2
3,783,757	-				-0.3
3,784,325	+		PP_3346	0.79	+0.6
3,784,326	-		PP_3346	0.79	-3.5
3,784,536	+				-2.2
3,784,536	+				-1.4
3,784,537	-				-0.9
3,784,537	-				-0.8
3,784,537	-				-0.4
3,784,537	-				-2.1
3,784,537	-				+0.7
3,784,842	+				-0.4
3,784,842	+				-1.2
3,784,843	-				-2.5
3,784,843	-				+0.1
3,784,843	-				-1.6
3,784,846	+				-0.1
3,784,846	+				-3.4
3,784,846	+				+2.3
3,785,025	+		PP_3348	0.19	+0.5
3,785,211	+		PP_3348	0.35	-0.0
3,785,211	+		PP_3348	0.35	+0.1
3,785,212	-		PP_3348	0.35	-1.7
3,785,212	-		PP_3348	0.35	-2.6