Strain Fitness in Pseudomonas putida KT2440 around PP_3343

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,780,485	+		PP_3342	0.59	-2.0
3,780,510	+		PP_3342	0.61	-2.1
3,780,540	+		PP_3342	0.63	+1.8
3,780,615	-		PP_3342	0.68	-1.1
3,780,615	-				+0.9
3,780,646	+		PP_3342	0.70	-2.2
3,780,647	-		PP_3342	0.70	+0.8
3,780,867	+		PP_3342	0.84	-0.8
3,780,867	+		PP_3342	0.84	+0.3
3,781,002	+				+0.8
3,781,136	-				-0.7
3,781,205	+				+0.1
3,781,206	-				-1.8
3,781,206	-				+0.9
3,781,238	-		PP_3343	0.12	+0.3
3,781,238	-		PP_3343	0.12	-0.1
3,781,238	-		PP_3343	0.12	-2.6
3,781,375	+		PP_3343	0.26	-3.5
3,781,375	+		PP_3343	0.26	-1.7
3,781,376	-		PP_3343	0.27	-1.3
3,781,411	+		PP_3343	0.30	-2.2
3,781,414	+		PP_3343	0.31	+0.8
3,781,414	+		PP_3343	0.31	-2.4
3,781,414	+		PP_3343	0.31	-0.9
3,781,414	+		PP_3343	0.31	-2.2
3,781,415	-		PP_3343	0.31	-0.1
3,781,415	-		PP_3343	0.31	+0.2
3,781,753	+		PP_3343	0.67	-1.8
3,781,753	+		PP_3343	0.67	-0.9
3,781,800	+		PP_3343	0.72	-2.3
3,781,801	-		PP_3343	0.72	+0.0
3,781,935	+		PP_3343	0.86	-0.4
3,781,936	-		PP_3343	0.86	-3.0
3,782,020	+				-1.9
3,782,338	+		PP_3344	0.32	-2.7
3,782,447	-		PP_3344	0.45	-1.6
3,782,530	-		PP_3344	0.55	+0.3
3,782,577	+		PP_3344	0.61	-1.3
3,782,577	+		PP_3344	0.61	+0.1
3,782,577	+				+0.3
3,782,577	+		PP_3344	0.61	-1.3
3,782,577	+		PP_3344	0.61	-0.6
3,782,581	+		PP_3344	0.61	-1.3
3,782,581	+		PP_3344	0.61	-1.1
3,782,581	+		PP_3344	0.61	-0.4
3,782,581	+		PP_3344	0.61	-2.9
3,782,582	-		PP_3344	0.61	+1.0