Strain Fitness in Pseudomonas putida KT2440 around PP_3338

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,775,218	+		PP_3336	0.43	-1.8
3,775,219	-		PP_3336	0.43	+0.8
3,775,252	+		PP_3336	0.50	+1.6
3,775,271	+		PP_3336	0.55	+0.9
3,775,271	+		PP_3336	0.55	-1.4
3,775,272	-		PP_3336	0.55	-0.1
3,775,315	-		PP_3336	0.64	-0.8
3,775,337	-		PP_3336	0.69	+1.7
3,775,504	+				+1.0
3,775,505	-				-2.0
3,775,535	+				+0.9
3,775,535	+				-1.0
3,775,535	+				+0.5
3,775,566	-				-2.6
3,775,621	-		PP_3337	0.10	+1.6
3,775,621	-		PP_3337	0.10	-1.6
3,775,707	-		PP_3337	0.32	-0.1
3,775,889	+		PP_3337	0.78	+0.2
3,775,890	-		PP_3337	0.78	-1.0
3,775,890	-		PP_3337	0.78	-1.4
3,775,890	-		PP_3337	0.78	+1.0
3,775,911	+		PP_3337	0.84	-0.1
3,775,911	+		PP_3337	0.84	+0.5
3,775,911	+		PP_3337	0.84	-1.7
3,775,912	-		PP_3337	0.84	-2.4
3,775,912	-		PP_3337	0.84	-2.5
3,775,971	-				-0.7
3,776,113	+		PP_3338	0.43	-2.7
3,776,113	+		PP_3338	0.43	-2.5
3,776,114	-		PP_3338	0.44	-1.1
3,776,114	-		PP_3338	0.44	-3.3
3,776,114	-		PP_3338	0.44	-1.8
3,776,182	-		PP_3338	0.62	-2.4
3,776,281	+		PP_3338	0.90	-1.8
3,776,408	+				+0.5
3,776,431	+				-0.9
3,776,432	-				+0.5
3,776,443	+				-0.1
3,776,747	-		PP_3339	0.70	+0.9
3,776,747	-		PP_3339	0.70	+2.1
3,776,749	+		PP_3339	0.71	-3.5
3,776,750	-		PP_3339	0.71	-3.0
3,777,088	-				-2.6