Strain Fitness in Pseudomonas putida KT2440 around PP_3321

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,756,192	-		PP_3319	0.74	-1.3
3,756,245	-		PP_3319	0.77	-0.9
3,756,245	-		PP_3319	0.77	+0.1
3,756,266	+		PP_3319	0.77	-2.1
3,756,266	+		PP_3319	0.77	+0.4
3,756,281	-		PP_3319	0.78	-1.9
3,756,326	+		PP_3319	0.80	-0.2
3,756,326	+		PP_3319	0.80	+0.9
3,756,326	+		PP_3319	0.80	+0.6
3,756,327	-		PP_3319	0.80	-1.3
3,756,382	+		PP_3319	0.83	-0.7
3,756,454	+		PP_3319	0.86	-0.7
3,756,455	-		PP_3319	0.86	-0.3
3,756,520	+		PP_3319	0.89	-2.0
3,756,706	-				+0.0
3,756,708	+				-1.3
3,756,708	+				+1.9
3,756,708	+				+0.1
3,756,709	-				-1.7
3,756,760	-				+0.8
3,756,800	+				+0.2
3,756,819	-				-0.6
3,756,884	-				-0.1
3,756,911	+				-0.3
3,756,912	-				+2.9
3,756,912	-				-0.4
3,756,950	+				-1.9
3,756,955	+				+0.2
3,756,956	-				-1.7
3,756,990	+		PP_3320	0.26	+0.9
3,756,990	+		PP_3320	0.26	+0.6
3,756,991	-		PP_3320	0.26	+0.9
3,756,991	-		PP_3320	0.26	-2.1
3,757,092	-		PP_3320	0.86	-2.1
3,757,092	-		PP_3320	0.86	+2.8
3,757,092	-		PP_3320	0.86	-0.3
3,757,205	-				+1.2
3,757,220	+				-0.0
3,757,220	+				+0.4
3,757,221	-				+0.5
3,757,221	-				-1.9
3,757,221	-				-0.2
3,757,293	+		PP_3321	0.22	+0.6
3,757,294	-		PP_3321	0.22	+1.0
3,757,342	-		PP_3321	0.32	-3.1
3,757,342	-		PP_3321	0.32	-0.7
3,757,342	-		PP_3321	0.32	-0.4
3,757,395	+		PP_3321	0.42	-2.2
3,757,395	+		PP_3321	0.42	-2.3
3,757,395	+		PP_3321	0.42	-2.0
3,757,395	+		PP_3321	0.42	-1.1
3,757,396	-		PP_3321	0.42	-1.4
3,757,396	-		PP_3321	0.42	+0.0
3,757,396	-		PP_3321	0.42	-0.2
3,757,396	-		PP_3321	0.42	-0.7
3,757,467	+		PP_3321	0.56	-1.5
3,757,467	+		PP_3321	0.56	+0.5
3,757,468	-		PP_3321	0.56	+0.1
3,757,468	-		PP_3321	0.56	-2.2
3,757,569	+		PP_3321	0.76	-0.6
3,757,570	-		PP_3321	0.76	-3.1
3,757,570	-		PP_3321	0.76	+1.1
3,757,703	+				-2.9
3,757,704	-				-1.4
3,757,704	-				+1.2
3,757,704	-				-0.3
3,757,881	+		PP_3322	0.19	+0.1
3,757,882	-		PP_3322	0.19	-1.9
3,757,914	+		PP_3322	0.23	+1.6
3,757,915	-		PP_3322	0.23	-0.0
3,758,096	+		PP_3322	0.41	-0.4
3,758,097	-		PP_3322	0.41	-2.2
3,758,097	-		PP_3322	0.41	+0.8
3,758,097	-		PP_3322	0.41	-2.4
3,758,163	+		PP_3322	0.47	-2.4
3,758,163	+		PP_3322	0.47	+1.1
3,758,163	+				+1.9
3,758,163	+		PP_3322	0.47	-0.0
3,758,300	+		PP_3322	0.61	-1.7
3,758,300	+		PP_3322	0.61	-2.8
3,758,313	-		PP_3322	0.62	-0.5
3,758,328	-		PP_3322	0.64	+0.3
3,758,328	-		PP_3322	0.64	+0.4
3,758,387	+		PP_3322	0.70	-1.4
3,758,387	+		PP_3322	0.70	-0.3
3,758,388	-		PP_3322	0.70	-0.0
3,758,431	-		PP_3322	0.74	+2.8
3,758,487	-		PP_3322	0.80	-0.9
3,758,487	-		PP_3322	0.80	-0.2
3,758,558	+		PP_3322	0.87	-1.4
3,758,648	-				+0.6
3,758,662	+				-0.6
3,758,663	-				-1.5