Strain Fitness in Pseudomonas putida KT2440 around PP_3306

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,741,384	+		PP_3305	0.44	+1.1
3,741,384	+		PP_3305	0.44	-0.4
3,741,384	+		PP_3305	0.44	+0.0
3,741,385	-		PP_3305	0.44	-0.7
3,741,385	-		PP_3305	0.44	+0.3
3,741,453	+		PP_3305	0.51	+2.7
3,741,453	+		PP_3305	0.51	-1.6
3,741,497	-		PP_3305	0.56	+1.0
3,741,497	-		PP_3305	0.56	-0.7
3,741,497	-		PP_3305	0.56	-2.0
3,741,548	+		PP_3305	0.61	+1.2
3,741,549	-		PP_3305	0.61	+2.3
3,741,653	+		PP_3305	0.72	-1.4
3,741,694	+		PP_3305	0.76	+1.2
3,741,694	+		PP_3305	0.76	-0.2
3,741,695	-		PP_3305	0.76	-0.8
3,741,728	-		PP_3305	0.79	-2.0
3,741,755	+		PP_3305	0.82	-2.3
3,741,763	+		PP_3305	0.83	-0.8
3,741,828	+		PP_3305	0.89	+1.0
3,741,891	-				-1.1
3,741,908	-				+0.4
3,741,914	-				-0.7
3,741,917	+				+0.8
3,741,918	-				-0.0
3,741,921	-				-1.9
3,741,946	-				-0.4
3,741,946	-				+0.4
3,741,946	-				-1.1
3,741,953	+				+1.9
3,741,966	-				-0.6
3,741,966	-				-0.1
3,741,985	-				-1.8
3,742,037	+				-2.9
3,742,151	+				-0.2
3,742,152	-				-0.4
3,742,254	+				+1.1
3,742,254	+				-2.4
3,742,255	-				-0.1
3,742,255	-				+1.1
3,742,305	+				-3.3
3,742,306	-				-1.1
3,742,310	+				+1.2
3,742,346	+				+0.6
3,742,560	+				-1.4
3,742,698	-				+0.3
3,742,698	-				-1.3
3,742,698	-				-2.0
3,742,725	+				-2.7
3,742,725	+				+1.3
3,742,725	+				-1.8
3,742,726	-				+0.0
3,742,726	-				+1.3
3,742,771	-				-0.4
3,742,995	-		PP_3307	0.77	-2.1
3,742,995	-		PP_3307	0.77	+0.6
3,743,189	+				-2.7
3,743,189	+				-0.3