Strain Fitness in Pseudomonas putida KT2440 around PP_3304

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,738,753	+		PP_3303	0.38	+1.2
3,738,754	-		PP_3303	0.39	+1.7
3,738,759	-		PP_3303	0.39	+1.6
3,738,759	-		PP_3303	0.39	+1.5
3,738,759	-		PP_3303	0.39	-1.4
3,739,091	+		PP_3303	0.64	+0.9
3,739,092	-		PP_3303	0.64	+0.5
3,739,112	+		PP_3303	0.66	-1.3
3,739,113	-		PP_3303	0.66	-2.1
3,739,113	-		PP_3303	0.66	+1.9
3,739,210	+		PP_3303	0.73	-2.6
3,739,210	+		PP_3303	0.73	+0.9
3,739,211	-		PP_3303	0.73	+1.0
3,739,211	-		PP_3303	0.73	-1.0
3,739,303	+				+1.9
3,739,304	-				+1.9
3,739,461	+				-2.6
3,739,462	-				-1.9
3,739,462	-				-0.4
3,739,484	+				+1.8
3,739,484	+				+1.0
3,739,530	+				+0.3
3,739,530	+				-0.3
3,739,531	-				+1.2
3,739,531	-				+2.0
3,739,557	+				+0.1
3,739,557	+				-0.3
3,739,557	+				+2.3
3,739,558	-				-2.7
3,739,558	-				-0.2
3,739,558	-				+0.6
3,739,558	-				+0.7
3,739,558	-				-1.7
3,739,558	-				+1.3
3,739,684	-		PP_3304	0.10	-0.8
3,739,770	+		PP_3304	0.17	-1.0
3,739,771	-		PP_3304	0.17	+0.3
3,739,790	+		PP_3304	0.19	-2.8
3,739,790	+		PP_3304	0.19	+1.5
3,739,791	-		PP_3304	0.19	-1.3
3,739,817	-		PP_3304	0.21	+1.7
3,739,836	-		PP_3304	0.22	-1.9
3,739,836	-		PP_3304	0.22	-0.7
3,739,838	+				+1.9
3,739,838	+		PP_3304	0.23	-0.1
3,739,839	-		PP_3304	0.23	-2.5
3,739,839	-		PP_3304	0.23	+1.9
3,739,866	+		PP_3304	0.25	+0.3
3,739,866	+		PP_3304	0.25	+0.5
3,739,981	+		PP_3304	0.34	-0.8
3,739,982	-		PP_3304	0.34	+0.9
3,740,106	-		PP_3304	0.44	+1.4
3,740,106	-		PP_3304	0.44	+0.7
3,740,157	-		PP_3304	0.48	-0.6
3,740,157	-		PP_3304	0.48	-2.0
3,740,288	+		PP_3304	0.59	-0.1
3,740,288	+		PP_3304	0.59	-1.1
3,740,289	-		PP_3304	0.59	-2.3
3,740,363	-		PP_3304	0.65	+1.9
3,740,363	-		PP_3304	0.65	+0.6
3,740,472	+		PP_3304	0.74	-1.8
3,740,525	-		PP_3304	0.78	+1.8
3,740,550	-		PP_3304	0.80	+1.8
3,740,562	+		PP_3304	0.81	+0.2
3,740,563	-		PP_3304	0.81	-0.1
3,740,767	+				-2.2
3,740,767	+				-1.3
3,740,768	-				-1.3
3,740,779	-				-0.0
3,740,800	+				-2.6
3,740,801	-				+1.7
3,740,801	-				-2.4
3,740,801	-				-0.5
3,741,021	-				+0.4
3,741,116	+		PP_3305	0.17	+0.2
3,741,117	-		PP_3305	0.17	-2.7
3,741,157	+		PP_3305	0.21	+2.0
3,741,198	-		PP_3305	0.25	+2.5
3,741,312	+		PP_3305	0.37	+0.4
3,741,384	+		PP_3305	0.44	+1.1
3,741,384	+		PP_3305	0.44	-0.4
3,741,384	+		PP_3305	0.44	+0.0
3,741,385	-		PP_3305	0.44	-0.7
3,741,385	-		PP_3305	0.44	+0.3
3,741,453	+		PP_3305	0.51	+2.7
3,741,453	+		PP_3305	0.51	-1.6
3,741,497	-		PP_3305	0.56	+1.0
3,741,497	-		PP_3305	0.56	-0.7
3,741,497	-		PP_3305	0.56	-2.0
3,741,548	+		PP_3305	0.61	+1.2
3,741,549	-		PP_3305	0.61	+2.3
3,741,653	+		PP_3305	0.72	-1.4
3,741,694	+		PP_3305	0.76	+1.2
3,741,694	+		PP_3305	0.76	-0.2
3,741,695	-		PP_3305	0.76	-0.8
3,741,728	-		PP_3305	0.79	-2.0
3,741,755	+		PP_3305	0.82	-2.3
3,741,763	+		PP_3305	0.83	-0.8