Strain Fitness in Pseudomonas putida KT2440 around PP_3291

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,724,440	+				-2.0
3,724,441	-				-1.7
3,724,673	+		PP_3290	0.26	-1.9
3,724,673	+		PP_3290	0.26	+1.0
3,724,674	-		PP_3290	0.26	-0.4
3,724,731	+		PP_3290	0.32	+0.3
3,724,732	-		PP_3290	0.32	+0.7
3,724,732	-		PP_3290	0.32	-2.8
3,724,984	+		PP_3290	0.60	+1.3
3,724,985	-		PP_3290	0.60	+1.3
3,725,019	+		PP_3290	0.63	-0.9
3,725,036	-		PP_3290	0.65	+1.3
3,725,036	-		PP_3290	0.65	-2.3
3,725,254	+		PP_3290	0.89	-1.9
3,725,254	+		PP_3290	0.89	-0.5
3,725,254	+		PP_3290	0.89	+1.4
3,725,255	-		PP_3290	0.89	-0.2
3,725,276	+				+1.2
3,725,323	+				-1.4
3,725,552	+		PP_3291	0.15	+0.0
3,725,552	+		PP_3291	0.15	+2.0
3,725,553	-		PP_3291	0.15	-2.6
3,725,553	-		PP_3291	0.15	-0.5
3,725,556	+		PP_3291	0.15	-3.6
3,725,556	+		PP_3291	0.15	+1.2
3,725,556	+		PP_3291	0.15	+0.4
3,725,556	+		PP_3291	0.15	+0.0
3,725,557	-		PP_3291	0.15	-1.1
3,725,557	-		PP_3291	0.15	+1.3
3,725,557	-		PP_3291	0.15	+0.2
3,725,595	-		PP_3291	0.18	-0.7
3,725,595	-		PP_3291	0.18	-1.1
3,725,691	-		PP_3291	0.25	+0.1
3,725,691	-		PP_3291	0.25	+1.6
3,725,721	-		PP_3291	0.27	-1.3
3,725,722	+		PP_3291	0.27	-1.2
3,725,723	-		PP_3291	0.27	-0.7
3,725,723	-		PP_3291	0.27	-2.9
3,725,830	+		PP_3291	0.35	-2.9
3,725,830	+		PP_3291	0.35	-0.1
3,725,831	-		PP_3291	0.35	-1.8
3,725,831	-		PP_3291	0.35	-2.5
3,725,968	+				+2.9
3,725,968	+		PP_3291	0.45	-2.1
3,725,968	+		PP_3291	0.45	+1.2
3,725,972	+		PP_3291	0.46	+1.0
3,725,972	+		PP_3291	0.46	+0.3
3,725,973	-		PP_3291	0.46	-1.4
3,726,012	-		PP_3291	0.49	-2.8
3,726,063	+		PP_3291	0.52	-0.4
3,726,101	+		PP_3291	0.55	-1.8
3,726,101	+		PP_3291	0.55	-0.9
3,726,101	+		PP_3291	0.55	+2.6
3,726,101	+		PP_3291	0.55	+1.0
3,726,101	+		PP_3291	0.55	-3.1
3,726,101	+		PP_3291	0.55	-1.6
3,726,102	-		PP_3291	0.55	+0.5
3,726,102	-		PP_3291	0.55	-2.3
3,726,102	-		PP_3291	0.55	-1.7
3,726,104	+		PP_3291	0.55	-2.7
3,726,104	+		PP_3291	0.55	+1.7
3,726,104	+		PP_3291	0.55	+1.2
3,726,104	+		PP_3291	0.55	-2.4
3,726,104	+		PP_3291	0.55	-2.0
3,726,104	+		PP_3291	0.55	-0.3
3,726,104	+		PP_3291	0.55	-3.7
3,726,104	+		PP_3291	0.55	-0.7
3,726,104	+		PP_3291	0.55	-1.3
3,726,104	+		PP_3291	0.55	+1.5
3,726,105	-		PP_3291	0.55	-1.6
3,726,105	-		PP_3291	0.55	-1.3
3,726,105	-		PP_3291	0.55	-0.7
3,726,110	+		PP_3291	0.56	-2.3
3,726,111	-		PP_3291	0.56	+0.9
3,726,111	-		PP_3291	0.56	-1.1
3,726,111	-		PP_3291	0.56	+0.4
3,726,111	-		PP_3291	0.56	+0.5
3,726,152	+		PP_3291	0.59	-0.2
3,726,153	-		PP_3291	0.59	-1.1
3,726,153	-		PP_3291	0.59	-2.2
3,726,490	+		PP_3291	0.83	-1.3
3,726,491	-		PP_3291	0.84	+0.1
3,726,593	+				-2.3
3,726,593	+				-0.5
3,726,594	-				+0.3
3,726,594	-				-1.2
3,726,594	-				+1.2
3,726,594	-				-1.2
3,726,784	-				-1.4
3,726,784	-				-1.2
3,726,803	-				-1.1
3,726,858	+		PP_3292	0.11	+1.3
3,726,858	+		PP_3292	0.11	-1.8
3,726,859	-		PP_3292	0.11	+0.2
3,726,874	-		PP_3292	0.13	+0.2
3,727,214	-		PP_3292	0.66	-0.5
3,727,214	-		PP_3292	0.66	+0.5
3,727,215	+		PP_3292	0.66	-2.3
3,727,215	+		PP_3292	0.66	+0.4
3,727,215	+		PP_3292	0.66	+0.5
3,727,216	-				+1.9
3,727,216	-		PP_3292	0.66	-0.0
3,727,493	+				-2.4
3,727,589	+		PP_3293	0.23	+0.7
3,727,635	+		PP_3293	0.34	-0.6
3,727,636	-		PP_3293	0.34	-2.8
3,727,637	+		PP_3293	0.34	-0.6
3,727,637	+		PP_3293	0.34	-2.2
3,727,638	-		PP_3293	0.34	-0.3
3,727,638	-		PP_3293	0.34	+0.9
3,727,638	-		PP_3293	0.34	-1.1
3,727,638	-		PP_3293	0.34	+2.9
3,727,638	-		PP_3293	0.34	+0.3
3,727,638	-		PP_3293	0.34	-1.9
3,727,638	-		PP_3293	0.34	+2.4