Strain Fitness in Pseudomonas putida KT2440 around PP_3279

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,712,489	-		PP_3278	0.49	-2.6
3,712,534	+		PP_3278	0.53	-1.2
3,712,535	-		PP_3278	0.53	-2.2
3,712,610	+		PP_3278	0.61	+0.8
3,712,610	+		PP_3278	0.61	-0.4
3,712,611	-		PP_3278	0.61	+0.2
3,712,628	+		PP_3278	0.63	+2.0
3,712,700	+		PP_3278	0.70	+1.3
3,712,706	+		PP_3278	0.71	-0.3
3,712,992	-				+0.3
3,713,012	+				+0.1
3,713,086	+				+0.6
3,713,294	+				-2.5
3,713,294	+				+0.6
3,713,294	+				-2.9
3,713,295	-				-1.8
3,713,638	+		PP_3279	0.34	-2.8
3,713,638	+		PP_3279	0.34	-1.3
3,713,702	+		PP_3279	0.38	+0.9
3,713,702	+		PP_3279	0.38	-2.1
3,713,743	+		PP_3279	0.42	-0.8
3,713,743	+		PP_3279	0.42	-1.7
3,713,744	-		PP_3279	0.42	-1.5
3,713,790	-		PP_3279	0.45	-1.2
3,713,790	-		PP_3279	0.45	-1.3
3,713,794	-		PP_3279	0.45	-0.3
3,713,939	+		PP_3279	0.56	-1.6
3,713,939	+		PP_3279	0.56	-1.6
3,713,940	-		PP_3279	0.57	-3.0
3,713,940	-		PP_3279	0.57	-0.2
3,713,940	-		PP_3279	0.57	+0.2
3,714,053	+		PP_3279	0.65	+0.7
3,714,086	+		PP_3279	0.68	-3.6
3,714,092	+		PP_3279	0.68	-0.6
3,714,092	+		PP_3279	0.68	-1.4
3,714,171	+		PP_3279	0.74	+0.9
3,714,269	+		PP_3279	0.81	-0.8
3,714,275	+		PP_3279	0.82	-2.8
3,714,276	-		PP_3279	0.82	-2.4
3,714,359	+		PP_3279	0.88	-2.9
3,714,399	-				+0.9
3,714,503	+				-0.8
3,714,503	+				-2.8
3,714,503	+				-1.9
3,714,503	+				+2.3
3,714,503	+				-0.9
3,714,503	+				-1.2
3,714,504	-				-0.4
3,714,504	-				-0.4
3,714,504	-				-2.1
3,714,536	+				-0.1
3,714,589	+				-0.6
3,714,590	-				-1.1
3,714,591	+				+0.9
3,714,591	+				-2.0
3,714,591	+				-0.4
3,714,592	-				-2.4
3,714,592	-				+0.1
3,714,672	-				+0.4
3,715,097	+		PP_3280	0.38	+0.5
3,715,457	-		PP_3280	0.67	+1.2