Strain Fitness in Pseudomonas putida KT2440 around PP_3276

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,709,958	-		PP_3274	0.59	-1.6
3,709,958	-		PP_3274	0.59	-2.3
3,709,997	+		PP_3274	0.63	-0.6
3,709,998	-		PP_3274	0.63	-0.3
3,710,017	-		PP_3274	0.65	+1.2
3,710,043	+		PP_3274	0.67	-0.5
3,710,053	+		PP_3274	0.68	+1.0
3,710,054	-		PP_3274	0.68	+0.0
3,710,054	-		PP_3274	0.68	-1.6
3,710,093	+		PP_3274	0.72	+1.5
3,710,227	+		PP_3274	0.84	-2.9
3,710,262	-		PP_3274	0.87	+3.1
3,710,275	+		PP_3274	0.89	+1.7
3,710,276	-		PP_3274	0.89	-0.0
3,710,276	-		PP_3274	0.89	+0.7
3,710,462	-				-0.6
3,710,753	-		PP_3275	0.64	+1.9
3,710,753	-		PP_3275	0.64	-1.1
3,710,753	-		PP_3275	0.64	-0.7
3,711,029	+		PP_3276	0.13	-3.4
3,711,029	+		PP_3276	0.13	-0.7
3,711,287	+		PP_3276	0.47	-2.8
3,711,287	+		PP_3276	0.47	-2.6
3,711,288	-		PP_3276	0.47	-1.9
3,711,522	-		PP_3276	0.78	+0.9
3,711,522	-		PP_3276	0.78	-1.6
3,711,665	+				-2.7
3,711,665	+				+1.8
3,711,684	+				-2.7
3,711,684	+				-1.3
3,711,684	+				-3.0
3,711,684	+				+0.9
3,711,685	-				+0.7
3,711,685	-				-0.5
3,711,685	-				-0.6
3,711,731	-		PP_3277	0.11	-0.5
3,711,748	+		PP_3277	0.17	-1.9
3,711,749	-		PP_3277	0.18	+2.0
3,711,749	-		PP_3277	0.18	-1.4
3,711,849	-		PP_3277	0.53	+2.1
3,711,860	-		PP_3277	0.57	+0.1
3,711,860	-		PP_3277	0.57	-2.4
3,712,040	+				-1.8
3,712,040	+				-0.8
3,712,041	-				+0.3
3,712,142	+		PP_3278	0.14	+0.3
3,712,176	-		PP_3278	0.17	+0.2
3,712,489	-		PP_3278	0.49	-2.6
3,712,534	+		PP_3278	0.53	-1.2
3,712,535	-		PP_3278	0.53	-2.2
3,712,610	+		PP_3278	0.61	+0.8
3,712,610	+		PP_3278	0.61	-0.4
3,712,611	-		PP_3278	0.61	+0.2
3,712,628	+		PP_3278	0.63	+2.0